DNase-seq_ENCSR058VBM
DNase-seq ENCSR058VBM [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (37 years)"]
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| Id: | DNase-seq/ENCSR058VBM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR058VBM [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF557TCY|/files/ENCFF557TCY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR058VBM | float |
DNase-seq_ENCSR058VBM |
DNase-seq ENCSR058VBM [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (37 years)"]
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[0.0465, 19.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF993CLU.bed.gz | 1.08 MB | 07052e83a123014d0c3d77c8f3032308 |
| ENCFF993CLU.bed.gz.dvc | 101.0 B | c367836733aaee0d48a9e211c5bf6cd4 |
| ENCFF993CLU.tabix.bed.gz | 1012.25 KB | 00877c0ef6976515b53d01d476b46e5d |
| ENCFF993CLU.tabix.bed.gz.dvc | 107.0 B | 7950a81f85fd9e61793aeb8ba210c5ec |
| ENCFF993CLU.tabix.bed.gz.tbi | 349.5 KB | f3d77de2f67849823f7f036e29d8cb51 |
| ENCFF993CLU.tabix.bed.gz.tbi.dvc | 110.0 B | fad3ec431e45a0225ba6e8b24d78b0be |
| genomic_resource.yaml | 2.07 KB | 4ba2bfb83a8275566916bbd561552d9b |
| genomic_resource_original.yaml | 1.96 KB | 2f99b5ccab7ce40df6862b8fbd7a647d |
| statistics/ |