DNase-seq_ENCSR057GPV
DNase-seq ENCSR057GPV [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR057GPV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR057GPV [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF733XEA|/files/ENCFF733XEA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR057GPV | float |
DNase-seq_ENCSR057GPV |
DNase-seq ENCSR057GPV [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0715, 12.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF385SUY.bed.gz | 983.12 KB | 95746e6b5873a1faddac3334796e4597 |
| ENCFF385SUY.bed.gz.dvc | 101.0 B | 60ba1f18a437d4f96be2e6ed2e3a9377 |
| ENCFF385SUY.tabix.bed.gz | 891.31 KB | f38a1af74e1281756154fe8828472651 |
| ENCFF385SUY.tabix.bed.gz.dvc | 106.0 B | 26cd5e75afbe6ff9b5589ea9ca147e47 |
| ENCFF385SUY.tabix.bed.gz.tbi | 423.84 KB | 2e85be053b4c9f5b6f83258a8ad1cb38 |
| ENCFF385SUY.tabix.bed.gz.tbi.dvc | 110.0 B | b40c8bf62fe3793791585efbcadbe111 |
| genomic_resource.yaml | 2.28 KB | 3129dea27a312db35c5493ee29a5aff6 |
| genomic_resource_original.yaml | 2.12 KB | becd95715823c1227260b9ffd87d14b9 |
| statistics/ |