Resource

Id DNase-seq/ENCSR053ZKPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR053ZKP [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR053ZKP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002369/
  • biosample_summary: Homo sapiens adrenal gland tissue female adult (53 years)
  • date_created: 2019-08-18T16:57:11.678399+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR053ZKP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR053ZKP float

DNase-seq_ENCSR053ZKP

DNase-seq ENCSR053ZKP [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)"]
HISTOGRAM FOR DNase-seq_ENCSR053ZKP [0.0336, 30.9]
n
26,683,368
mean
1.79
sd
2.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 266833680.83% 137534
chr1 2399081 0.96% 12477
chr2 2225090 0.92% 11374
chr3 1491037 0.75% 7815
chr4 875688 0.46% 4647
chr5 1233546 0.68% 6475
chr6 1187979 0.70% 6282
chr7 1274524 0.80% 6626
chr8 1152274 0.79% 5947
chr9 1302723 0.94% 6653
chr10 1272797 0.95% 6628
chr11 1521389 1.13% 7647
chr12 1216374 0.91% 6336
chr13 502437 0.44% 2658
chr14 900645 0.84% 4659
chr15 988891 0.97% 5080
chr16 1021667 1.13% 5237
chr17 1532775 1.84% 7721
chr18 566912 0.71% 2946
chr19 1379667 2.35% 6741
chr20 850706 1.32% 4360
chr21 385811 0.83% 1955
chr22 776771 1.53% 3971
chrX 624348 0.40% 3297
chrY 236 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 137534 1 1080 194.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF669RIT.bed.gz 1.46 MB 0ab8ec4f8e9ae46cc60197175b9f4f05
ENCFF669RIT.tabix.bed.gz 1.34 MB 5d2434d54b67e359850bc36da2f21bd6
ENCFF669RIT.tabix.bed.gz.tbi 411.63 KB 7cd3ee4d05d137cab51e000654a41a34
genomic_resource.yaml 1.23 KB eb68ab6d7d6f199a4168bbb3cb635add
statistics/