Resource

Id DNase-seq/ENCSR052AWEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR052AWE [biosample_summary="Homo sapiens PC-3"]
Description
Labels
  • accession: ENCSR052AWE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002074/
  • biosample_summary: Homo sapiens PC-3
  • date_created: 2015-03-22T21:31:51.294100+00:00
  • date_released: 2015-11-05
  • doi: 10.17989/ENCSR052AWE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR052AWE float

DNase-seq_ENCSR052AWE
DNase-seq ENCSR052AWE [biosample_summary="Homo sapiens PC-3"]
 HISTOGRAM FOR DNase-seq_ENCSR052AWE [1, 2.36e+05]
n
54,601,294
mean
478
sd
887

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 546012941.70% 363774
chr1 5075357 2.04% 33814
chr2 4642071 1.92% 30931
chr3 3783521 1.91% 25203
chr4 3160590 1.66% 21055
chr5 3277524 1.81% 21845
chr6 3251296 1.90% 21671
chr7 2772867 1.74% 18467
chr8 2921307 2.01% 19457
chr9 2028112 1.47% 13513
chr10 2660366 1.99% 17724
chr11 2674580 1.98% 17820
chr12 2730313 2.05% 18194
chr13 1559035 1.36% 10389
chr14 1808629 1.69% 12049
chr15 1613680 1.58% 10749
chr16 1277387 1.41% 8513
chr17 1942992 2.33% 12945
chr18 1266466 1.58% 8437
chr19 1341752 2.29% 8937
chr20 1412884 2.19% 9413
chr21 662994 1.42% 4416
chr22 716830 1.41% 4775
chrX 1985491 1.27% 13224
chrY 35250 0.06% 233
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 363774 1 450 150.1 150
global segment-length histogram

Files

Filename Size md5
ENCFF971OHV.bed.gz 3.52 MB fe5de748f741861fc2542922752cad51
ENCFF971OHV.tabix.bed.gz 3.04 MB 2c4d332711d2db7eac83ef4557278ebe
ENCFF971OHV.tabix.bed.gz.tbi 877.17 KB 91a86ac1b593aaa907a63ac00ae769df
genomic_resource.yaml 1.25 KB 94eb556b1de28dc7d3175e4d363240da
statistics/