Resource
| Id | DNase-seq/ENCSR051CYH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR051CYH [biosample_summary="Homo sapiens T-cell male adult (42 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF942ZXV|/files/ENCFF942ZXV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR051CYH | float |
DNase-seq_ENCSR051CYH |
DNase-seq ENCSR051CYH [biosample_summary="Homo sapiens T-cell male adult (42 years)"]
|
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[0.216, 25] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5568942 | 0.17% | 27212 |
| chr1 | 572072 | 0.23% | 2785 |
| chr2 | 372489 | 0.15% | 1786 |
| chr3 | 289361 | 0.15% | 1413 |
| chr4 | 184412 | 0.10% | 888 |
| chr5 | 234395 | 0.13% | 1134 |
| chr6 | 306398 | 0.18% | 1504 |
| chr7 | 249812 | 0.16% | 1231 |
| chr8 | 190271 | 0.13% | 940 |
| chr9 | 222801 | 0.16% | 1086 |
| chr10 | 242287 | 0.18% | 1202 |
| chr11 | 288102 | 0.21% | 1431 |
| chr12 | 284554 | 0.21% | 1380 |
| chr13 | 108525 | 0.09% | 519 |
| chr14 | 198658 | 0.19% | 968 |
| chr15 | 185616 | 0.18% | 911 |
| chr16 | 246468 | 0.27% | 1205 |
| chr17 | 363388 | 0.44% | 1784 |
| chr18 | 77949 | 0.10% | 376 |
| chr19 | 435461 | 0.74% | 2079 |
| chr20 | 153252 | 0.24% | 775 |
| chr21 | 62999 | 0.13% | 311 |
| chr22 | 142654 | 0.28% | 715 |
| chrX | 151020 | 0.10% | 762 |
| chrY | 5998 | 0.01% | 27 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 27212 | 2 | 880 | 204.65 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF141YCX.bed.gz | 300.68 KB | f37dc9dc14c713f53383d4b8883e8b27 |
| ENCFF141YCX.tabix.bed.gz | 274.99 KB | e91bd4376e8ba16a192fbb072aeb5dc0 |
| ENCFF141YCX.tabix.bed.gz.tbi | 153.98 KB | 2ec7feb28fa13caffd5f7172c568a9da |
| genomic_resource.yaml | 2.0 KB | 6a62b42b1809de5a56fef7a7eaa54d0a |
| statistics/ |
