Resource

Id DNase-seq/ENCSR051CYHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR051CYH [biosample_summary="Homo sapiens T-cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR051CYH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (42 years)
  • date_created: 2020-04-24T17:45:35.618817+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR051CYH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR051CYH float

DNase-seq_ENCSR051CYH

DNase-seq ENCSR051CYH [biosample_summary="Homo sapiens T-cell male adult (42 years)"]
HISTOGRAM FOR DNase-seq_ENCSR051CYH [0.216, 25]
n
5,568,942
mean
4.44
sd
3.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 55689420.17% 27212
chr1 572072 0.23% 2785
chr2 372489 0.15% 1786
chr3 289361 0.15% 1413
chr4 184412 0.10% 888
chr5 234395 0.13% 1134
chr6 306398 0.18% 1504
chr7 249812 0.16% 1231
chr8 190271 0.13% 940
chr9 222801 0.16% 1086
chr10 242287 0.18% 1202
chr11 288102 0.21% 1431
chr12 284554 0.21% 1380
chr13 108525 0.09% 519
chr14 198658 0.19% 968
chr15 185616 0.18% 911
chr16 246468 0.27% 1205
chr17 363388 0.44% 1784
chr18 77949 0.10% 376
chr19 435461 0.74% 2079
chr20 153252 0.24% 775
chr21 62999 0.13% 311
chr22 142654 0.28% 715
chrX 151020 0.10% 762
chrY 5998 0.01% 27
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27212 2 880 204.65 200
global segment-length histogram

Files

Filename Size md5
ENCFF141YCX.bed.gz 300.68 KB f37dc9dc14c713f53383d4b8883e8b27
ENCFF141YCX.tabix.bed.gz 274.99 KB e91bd4376e8ba16a192fbb072aeb5dc0
ENCFF141YCX.tabix.bed.gz.tbi 153.98 KB 2ec7feb28fa13caffd5f7172c568a9da
genomic_resource.yaml 2.0 KB 6a62b42b1809de5a56fef7a7eaa54d0a
statistics/