DNase-seq_ENCSR051CYH
DNase-seq ENCSR051CYH [biosample_summary="Homo sapiens T-cell male adult (42 years)"]
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| Id: | DNase-seq/ENCSR051CYH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR051CYH [biosample_summary="Homo sapiens T-cell male adult (42 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF942ZXV|/files/ENCFF942ZXV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR051CYH | float |
DNase-seq_ENCSR051CYH |
DNase-seq ENCSR051CYH [biosample_summary="Homo sapiens T-cell male adult (42 years)"]
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[0.216, 25] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF141YCX.bed.gz | 300.68 KB | f37dc9dc14c713f53383d4b8883e8b27 |
| ENCFF141YCX.bed.gz.dvc | 100.0 B | 4d494d9ef020197a693013f72a526aa6 |
| ENCFF141YCX.tabix.bed.gz | 274.99 KB | e91bd4376e8ba16a192fbb072aeb5dc0 |
| ENCFF141YCX.tabix.bed.gz.dvc | 106.0 B | da973ca0e88a0ed0f1936e297970ca86 |
| ENCFF141YCX.tabix.bed.gz.tbi | 153.98 KB | 2ec7feb28fa13caffd5f7172c568a9da |
| ENCFF141YCX.tabix.bed.gz.tbi.dvc | 110.0 B | 216458de78f364aefa4114884858417c |
| genomic_resource.yaml | 2.0 KB | 6a62b42b1809de5a56fef7a7eaa54d0a |
| genomic_resource_original.yaml | 1.91 KB | bfdffbba1d86e2e910194c2f9eb15a0b |
| statistics/ |