DNase-seq_ENCSR049SVH
DNase-seq ENCSR049SVH [biosample_summary="Homo sapiens brain organoid, 180 days post differentiation"]
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| Id: | DNase-seq/ENCSR049SVH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR049SVH [biosample_summary="Homo sapiens brain organoid, 180 days post differentiation"] |
| Description: |
status: released biological_replicates: Rep 1 summary: brain organoid 180 days post differentiation output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF786YZF|/files/ENCFF786YZF/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR049SVH | float |
DNase-seq_ENCSR049SVH |
DNase-seq ENCSR049SVH [biosample_summary="Homo sapiens brain organoid, 180 days post differentiation"]
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[0.0525, 13.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF844CAH.bed.gz | 918.94 KB | bb4d7bec48b16073a8fdb7fa41b6efe6 |
| ENCFF844CAH.bed.gz.dvc | 100.0 B | 95c897b481dd4ae891a4ef2ee7b0a742 |
| ENCFF844CAH.tabix.bed.gz | 843.85 KB | 2530f25b425ef10f366e83bd032fe24f |
| ENCFF844CAH.tabix.bed.gz.dvc | 106.0 B | 0e57852eb755aa832291d9c5cddc0570 |
| ENCFF844CAH.tabix.bed.gz.tbi | 303.74 KB | 38e906f2c97d8d186a9e5959f860c9e9 |
| ENCFF844CAH.tabix.bed.gz.tbi.dvc | 110.0 B | 40c1429b8e6d05c37ee1e84cbb2b0738 |
| genomic_resource.yaml | 2.08 KB | d67a1c67ba496f83306e95fa7c68608e |
| genomic_resource_original.yaml | 1.98 KB | 57a036ca8152fdbccc8c56fd96580d16 |
| statistics/ |