DNase-seq_ENCSR047FNH
DNase-seq ENCSR047FNH [biosample_summary="Homo sapiens large intestine tissue male embryo (113 days)"]
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| Id: | DNase-seq/ENCSR047FNH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR047FNH [biosample_summary="Homo sapiens large intestine tissue male embryo (113 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (113 days) output_type: peaks audit_warning: Replicate 1_2 has no significant footprints detected. audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF746PNK|/files/ENCFF746PNK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR047FNH | float |
DNase-seq_ENCSR047FNH |
DNase-seq ENCSR047FNH [biosample_summary="Homo sapiens large intestine tissue male embryo (113 days)"]
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[0.153, 12.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF235JPE.bed.gz | 670.83 KB | d9070a7d2b1e7e3bea55d7fd2244f1c9 |
| ENCFF235JPE.bed.gz.dvc | 100.0 B | 382032eefceec604c2cdbd9332ad3972 |
| ENCFF235JPE.tabix.bed.gz | 605.65 KB | eaac491b52dd135762ab37af3f8f3c33 |
| ENCFF235JPE.tabix.bed.gz.dvc | 106.0 B | 38f2b98062ddcc872154ca7accee1593 |
| ENCFF235JPE.tabix.bed.gz.tbi | 316.32 KB | 74e9f0c388c974869dc6910ddeabd68d |
| ENCFF235JPE.tabix.bed.gz.tbi.dvc | 110.0 B | c55914f104fadaa60a2cf83a1ed5bc55 |
| genomic_resource.yaml | 2.13 KB | 6d06ba7f4e3bbe3cc193fe7b5b1e886f |
| genomic_resource_original.yaml | 2.02 KB | 587ea4f5198237f6659b3823f76fc861 |
| statistics/ |