Resource

Id DNase-seq/ENCSR040DGJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR040DGJ [biosample_summary="Homo sapiens T-cell"]
Description
Labels
  • accession: ENCSR040DGJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell
  • date_created: 2015-09-16T21:41:59.949520+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR040DGJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR040DGJ float

DNase-seq_ENCSR040DGJ

DNase-seq ENCSR040DGJ [biosample_summary="Homo sapiens T-cell"]
HISTOGRAM FOR DNase-seq_ENCSR040DGJ [3, 1.18e+03]
n
6,620,818
mean
73.4
sd
81.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 66208180.21% 44073
chr1 667841 0.27% 4446
chr2 487094 0.20% 3246
chr3 388334 0.20% 2583
chr4 264600 0.14% 1760
chr5 314850 0.17% 2094
chr6 401400 0.24% 2671
chr7 314163 0.20% 2091
chr8 251400 0.17% 1674
chr9 262200 0.19% 1744
chr10 295985 0.22% 1968
chr11 342254 0.25% 2279
chr12 344334 0.26% 2293
chr13 144600 0.13% 963
chr14 228750 0.21% 1523
chr15 208950 0.20% 1393
chr16 243300 0.27% 1621
chr17 364611 0.44% 2424
chr18 115200 0.14% 766
chr19 364350 0.62% 2425
chr20 176474 0.27% 1177
chr21 81242 0.17% 542
chr22 146063 0.29% 972
chrX 211473 0.14% 1409
chrY 1350 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44073 5 300 150.22 150
global segment-length histogram

Files

Filename Size md5
ENCFF168YQF.bed.gz 432.33 KB 56d8d32d23e50cd4828a5d33f18f4519
ENCFF168YQF.tabix.bed.gz 374.94 KB dc3b41d756b057abfe14a4a6b1e8f1c6
ENCFF168YQF.tabix.bed.gz.tbi 243.75 KB 0ec345c951e44685e13120c36560e3f2
genomic_resource.yaml 1.26 KB d2705a026177aef89974c2383ec16156
statistics/