DNase-seq_ENCSR039ZVQ
DNase-seq ENCSR039ZVQ [biosample_summary="Homo sapiens left renal cortex interstitium tissue male embryo (120 days)"]
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| Id: | DNase-seq/ENCSR039ZVQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR039ZVQ [biosample_summary="Homo sapiens left renal cortex interstitium tissue male embryo (120 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (120 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN116RGJ|/analyses/ENCAN116RGJ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF228PWX|/files/ENCFF228PWX/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 22849730 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF738LZH|/files/ENCFF738LZH/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 22697092 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR039ZVQ | float |
DNase-seq_ENCSR039ZVQ |
DNase-seq ENCSR039ZVQ [biosample_summary="Homo sapiens left renal cortex interstitium tissue male embryo (120 days)"]
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[2, 307] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF371AFC.bed.gz | 584.61 KB | d24ccc1c02a092b456488d734af3ff6e |
| ENCFF371AFC.bed.gz.dvc | 100.0 B | 921ce16ed1725d51ac9774c39ffaf871 |
| ENCFF371AFC.tabix.bed.gz | 500.15 KB | f78724241726c6b67784fd081cbf441a |
| ENCFF371AFC.tabix.bed.gz.dvc | 106.0 B | 26b467d6e1f7f9823b4c400a43444aac |
| ENCFF371AFC.tabix.bed.gz.tbi | 317.79 KB | 861617755a68ea787f84feb2c5355453 |
| ENCFF371AFC.tabix.bed.gz.tbi.dvc | 110.0 B | 8d05f95d74916e6be944169c96577239 |
| genomic_resource.yaml | 2.65 KB | 98e74298210692ecf446758872718fe0 |
| genomic_resource_original.yaml | 2.53 KB | bd6bda601c860279f6c461683b45a131 |
| statistics/ |