Resource

Id DNase-seq/ENCSR038POVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR038POV [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
Description
Labels
  • accession: ENCSR038POV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • date_created: 2020-04-18T05:26:51.449567+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR038POV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR038POV float

DNase-seq_ENCSR038POV
DNase-seq ENCSR038POV [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR038POV [0.0675, 64.9]
n
9,839,038
mean
5.45
sd
6.95

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 98390380.31% 52822
chr1 984159 0.40% 5256
chr2 710058 0.29% 3856
chr3 516631 0.26% 2769
chr4 334025 0.18% 1773
chr5 436622 0.24% 2359
chr6 567700 0.33% 3036
chr7 437862 0.27% 2380
chr8 380234 0.26% 2072
chr9 391470 0.28% 2094
chr10 451279 0.34% 2448
chr11 517181 0.38% 2784
chr12 508203 0.38% 2694
chr13 199571 0.17% 1054
chr14 363991 0.34% 1960
chr15 320002 0.31% 1751
chr16 407845 0.45% 2180
chr17 596837 0.72% 3172
chr18 148311 0.18% 803
chr19 633035 1.08% 3305
chr20 271669 0.42% 1474
chr21 129184 0.28% 709
chr22 247761 0.49% 1352
chrX 285137 0.18% 1538
chrY 271 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52822 1 760 186.27 180
global segment-length histogram

Files

Filename Size md5
ENCFF088FRY.bed.gz 595.17 KB c130185637531bd169b5c579c4324ca2
ENCFF088FRY.tabix.bed.gz 544.63 KB cc0a236c5266f003d880ed8fac6f33a6
ENCFF088FRY.tabix.bed.gz.tbi 232.39 KB 1057cb29cbb10bc823f78fa83ba90d21
genomic_resource.yaml 1.71 KB 93a451d491b7e43886033b038db60b5a
statistics/