DNase-seq_ENCSR037PIU
DNase-seq ENCSR037PIU [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; posterior cingulate gyrus tissue male adult (80 years)"]
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| Id: | DNase-seq/ENCSR037PIU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR037PIU [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; posterior cingulate gyrus tissue male adult (80 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (80 years) with Cognitive impairment, Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF845QKE|/files/ENCFF845QKE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR037PIU | float |
DNase-seq_ENCSR037PIU |
DNase-seq ENCSR037PIU [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; posterior cingulate gyrus tissue male adult (80 years)"]
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[0.0538, 12.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF763XXP.bed.gz | 911.87 KB | 3416818c48c5849e0f82924a0179f453 |
| ENCFF763XXP.bed.gz.dvc | 100.0 B | 8e14cbc0e87e035b97e3f79adf76646d |
| ENCFF763XXP.tabix.bed.gz | 825.17 KB | 6bf39dc7d968c2209d04d95ac8666e89 |
| ENCFF763XXP.tabix.bed.gz.dvc | 106.0 B | 31b0ae92fad1e8feecf46e6774885d5d |
| ENCFF763XXP.tabix.bed.gz.tbi | 402.99 KB | dd14d700901a18104a9d6bcc5319a98f |
| ENCFF763XXP.tabix.bed.gz.tbi.dvc | 110.0 B | 99d83a3290c92326b674b4386b234d1f |
| genomic_resource.yaml | 2.31 KB | 795091b38dfd60afdfe656b4fe163f0c |
| genomic_resource_original.yaml | 2.15 KB | e60d733b23ce2ffac6484617516d3a39 |
| statistics/ |