DNase-seq_ENCSR037PGI
DNase-seq ENCSR037PGI [biosample_summary="Homo sapiens RCC 7860"]
×
| Id: | DNase-seq/ENCSR037PGI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR037PGI [biosample_summary="Homo sapiens RCC 7860"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF499DRT|/files/ENCFF499DRT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF386XBC|/files/ENCFF386XBC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR037PGI | float |
DNase-seq_ENCSR037PGI |
DNase-seq ENCSR037PGI [biosample_summary="Homo sapiens RCC 7860"]
|
|
[0.0288, 153] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF589UEE.bed.gz | 1.45 MB | 2d40818a104dcdc4ce107887a4f77b6d |
| ENCFF589UEE.bed.gz.dvc | 101.0 B | 35227625143de3a572ab7161d4f8e5b6 |
| ENCFF589UEE.tabix.bed.gz | 1.33 MB | b5d8d9574e0cc5a828b16d3ae64611d4 |
| ENCFF589UEE.tabix.bed.gz.dvc | 107.0 B | 5f5678a2214e275b8fcd1c8319d30973 |
| ENCFF589UEE.tabix.bed.gz.tbi | 480.92 KB | 14c2e0f2b5087a1a2f31af1fc70c362b |
| ENCFF589UEE.tabix.bed.gz.tbi.dvc | 110.0 B | d8653c9a035896b523ade0ab09f2d7b5 |
| genomic_resource.yaml | 2.77 KB | 0ef40dcda0204d7beb9b98c4b2fb1d58 |
| genomic_resource_original.yaml | 2.7 KB | 2a0144176834ef93f4b433a5f5e201de |
| statistics/ |