DNase-seq_ENCSR036VRV
DNase-seq ENCSR036VRV [biosample_summary="Homo sapiens right kidney tissue female embryo (107 days)"]
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| Id: | DNase-seq/ENCSR036VRV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR036VRV [biosample_summary="Homo sapiens right kidney tissue female embryo (107 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (107 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN047SQS|/analyses/ENCAN047SQS/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF385AVB|/files/ENCFF385AVB/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 24688832 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF774DLC|/files/ENCFF774DLC/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 24523925 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR036VRV | float |
DNase-seq_ENCSR036VRV |
DNase-seq ENCSR036VRV [biosample_summary="Homo sapiens right kidney tissue female embryo (107 days)"]
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[2, 444] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF870ASQ.bed.gz | 742.55 KB | 9b7a483b4a3e8710305e6a47f7331ed9 |
| ENCFF870ASQ.bed.gz.dvc | 100.0 B | ef1d52f642b10595bbf70dcfea962c23 |
| ENCFF870ASQ.tabix.bed.gz | 636.89 KB | dbb44069bf29b1231a72ce1b9b3aa44b |
| ENCFF870ASQ.tabix.bed.gz.dvc | 106.0 B | e5f49929a221b5b0d9136f62ec93eae4 |
| ENCFF870ASQ.tabix.bed.gz.tbi | 386.24 KB | c0354ae94ef4158d8cef93d8f05605fa |
| ENCFF870ASQ.tabix.bed.gz.tbi.dvc | 110.0 B | ff3f8fad9e78eca4f08a60739b678004 |
| genomic_resource.yaml | 2.6 KB | 595e5643d515f24b653f07f5f6170077 |
| genomic_resource_original.yaml | 2.5 KB | 9f51eafbfd44f27ad09ca3f2ad9b641f |
| statistics/ |