Resource

Id DNase-seq/ENCSR035SZEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR035SZE [biosample_summary="Homo sapiens T-helper 1 cell male adult (56 years)"]
Description
Labels
  • accession: ENCSR035SZE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000545/
  • biosample_summary: Homo sapiens T-helper 1 cell male adult (56 years)
  • date_created: 2020-03-30T21:22:40.218686+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR035SZE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (56 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR035SZE float

DNase-seq_ENCSR035SZE

DNase-seq ENCSR035SZE [biosample_summary="Homo sapiens T-helper 1 cell male adult (56 years)"]
HISTOGRAM FOR DNase-seq_ENCSR035SZE [0.0888, 37]
n
8,459,708
mean
4.07
sd
4.77

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 84597080.26% 43766
chr1 847955 0.34% 4359
chr2 592040 0.24% 3093
chr3 426242 0.21% 2230
chr4 288321 0.15% 1489
chr5 365648 0.20% 1869
chr6 479846 0.28% 2446
chr7 398462 0.25% 2060
chr8 369574 0.25% 1914
chr9 353530 0.26% 1857
chr10 380930 0.28% 1984
chr11 463647 0.34% 2435
chr12 403806 0.30% 2083
chr13 157909 0.14% 800
chr14 332609 0.31% 1709
chr15 260460 0.26% 1364
chr16 348753 0.39% 1803
chr17 492955 0.59% 2540
chr18 131538 0.16% 684
chr19 540023 0.92% 2713
chr20 245320 0.38% 1282
chr21 117419 0.25% 622
chr22 206809 0.41% 1094
chrX 246562 0.16% 1285
chrY 9350 0.02% 51
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43766 4 976 193.29 180
global segment-length histogram

Files

Filename Size md5
ENCFF676TSC.bed.gz 491.12 KB 1334eb2d24b020943e7616da77d32275
ENCFF676TSC.tabix.bed.gz 449.29 KB df5f74111faf708fd6a6aeb1cc7cf95d
ENCFF676TSC.tabix.bed.gz.tbi 194.23 KB 6bf4f55aee6caa875345c5a4ed787350
genomic_resource.yaml 1.21 KB 1a210178a7a8dc04f1bc5f4473be90fc
statistics/