DNase-seq_ENCSR033DQS
DNase-seq ENCSR033DQS [biosample_summary="Homo sapiens muscle of leg tissue male embryo (97 days)"]
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| Id: | DNase-seq/ENCSR033DQS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR033DQS [biosample_summary="Homo sapiens muscle of leg tissue male embryo (97 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_warning: Replicate 1_3 has no significant footprints detected. audit_warning: Alignment file {ENCFF951SGI|/files/ENCFF951SGI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31073461 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF951SGI|/files/ENCFF951SGI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR033DQS | float |
DNase-seq_ENCSR033DQS |
DNase-seq ENCSR033DQS [biosample_summary="Homo sapiens muscle of leg tissue male embryo (97 days)"]
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[0.161, 17.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF348ZJB.bed.gz | 526.19 KB | c32acb1c0c6875f87dda3342eddb1f3b |
| ENCFF348ZJB.bed.gz.dvc | 100.0 B | be98692a5f903cc5a83a457461d104bf |
| ENCFF348ZJB.tabix.bed.gz | 470.45 KB | dc6a3f70590a8fd92041bf43e96574b7 |
| ENCFF348ZJB.tabix.bed.gz.dvc | 106.0 B | 5718f32672a99fb8794a7b13ff27b74a |
| ENCFF348ZJB.tabix.bed.gz.tbi | 283.63 KB | 03cdea71936a7b7f14be967abc5a7ba7 |
| ENCFF348ZJB.tabix.bed.gz.tbi.dvc | 110.0 B | c979b1209f9f63a9366f133ce6d75781 |
| genomic_resource.yaml | 2.74 KB | 903418968adf61290d20ad033353c15d |
| genomic_resource_original.yaml | 2.64 KB | 940d51afccb003c4dd44ba39994a30f6 |
| statistics/ |