Resource

Id DNase-seq/ENCSR032NNUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR032NNU [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (59 years)"]
Description
Labels
  • accession: ENCSR032NNU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002079/
  • biosample_summary: Homo sapiens left cardiac atrium tissue female adult (59 years)
  • date_created: 2019-02-01T18:30:18.652577+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR032NNU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR032NNU float

DNase-seq_ENCSR032NNU

DNase-seq ENCSR032NNU [biosample_summary="Homo sapiens left cardiac atrium tissue female adult (59 years)"]
HISTOGRAM FOR DNase-seq_ENCSR032NNU [0.0446, 41.3]
n
21,602,657
mean
2.49
sd
3.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 216026570.67% 117829
chr1 1976963 0.79% 10827
chr2 1591791 0.66% 8773
chr3 1197209 0.60% 6635
chr4 799486 0.42% 4381
chr5 1044230 0.58% 5818
chr6 967639 0.57% 5415
chr7 1079608 0.68% 5907
chr8 926902 0.64% 5130
chr9 1054384 0.76% 5621
chr10 1042859 0.78% 5783
chr11 1278708 0.95% 6788
chr12 979395 0.73% 5332
chr13 421580 0.37% 2326
chr14 702943 0.66% 3800
chr15 691791 0.68% 3823
chr16 956831 1.06% 5148
chr17 1258353 1.51% 6775
chr18 386480 0.48% 2196
chr19 1062170 1.81% 5513
chr20 687053 1.07% 3731
chr21 368806 0.79% 1972
chr22 645642 1.27% 3472
chrX 480948 0.31% 2655
chrY 886 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117829 1 880 183.34 180
global segment-length histogram

Files

Filename Size md5
ENCFF412VAL.bed.gz 1.26 MB 3a25a9c79197a2e1ba5cc0f98253a157
ENCFF412VAL.tabix.bed.gz 1.15 MB 3078f121219108fcf64731009643f70e
ENCFF412VAL.tabix.bed.gz.tbi 375.13 KB 80301d99c9ba85c77985007c01097fff
genomic_resource.yaml 1.25 KB 46c0d10616c8f9a44a25ee8ac22f2ed5
statistics/