DNase-seq_ENCSR022UVL
DNase-seq ENCSR022UVL [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR022UVL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR022UVL [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF143UWH|/files/ENCFF143UWH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR022UVL | float |
DNase-seq_ENCSR022UVL |
DNase-seq ENCSR022UVL [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0511, 15.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF303YZV.bed.gz | 877.94 KB | c6d8f86a47894e5444783018363e64bf |
| ENCFF303YZV.bed.gz.dvc | 100.0 B | 557c637ba83fa647c702ea3e35e808e2 |
| ENCFF303YZV.tabix.bed.gz | 798.84 KB | b7f87dcabc7309ebca14bcc800c87fe4 |
| ENCFF303YZV.tabix.bed.gz.dvc | 106.0 B | b3cbf8327078e1f647b9cc06d210255d |
| ENCFF303YZV.tabix.bed.gz.tbi | 288.02 KB | d345d2682389a793010d5225bd917f26 |
| ENCFF303YZV.tabix.bed.gz.tbi.dvc | 110.0 B | 3cdad58b63e3ae078b0b032ef2890445 |
| genomic_resource.yaml | 2.31 KB | 745a4194fb2d1454c36f5613af2ee459 |
| genomic_resource_original.yaml | 2.15 KB | 689ec3a28a195376b4028524a1e6f0ee |
| statistics/ |