DNase-seq_ENCSR022ECC
DNase-seq ENCSR022ECC [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (96 days)"]
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| Id: | DNase-seq/ENCSR022ECC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR022ECC [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (96 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (96 days) output_type: peaks audit_warning: Alignment file {ENCFF850HIE|/files/ENCFF850HIE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30046310 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR022ECC | float |
DNase-seq_ENCSR022ECC |
DNase-seq ENCSR022ECC [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (96 days)"]
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[0.234, 26.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF463LTS.bed.gz | 639.53 KB | 99c8a410b554f9551b10a90859229d5b |
| ENCFF463LTS.bed.gz.dvc | 100.0 B | 7eb6e796bfe75de61bb2e966c1331326 |
| ENCFF463LTS.tabix.bed.gz | 572.09 KB | ad8cab3b1bb78a289a49e2353bc246fc |
| ENCFF463LTS.tabix.bed.gz.dvc | 106.0 B | 406da7cae5b4c69fd9dca15071e2d6cb |
| ENCFF463LTS.tabix.bed.gz.tbi | 317.28 KB | 3b13fba51d837f3d83bef35c19646a28 |
| ENCFF463LTS.tabix.bed.gz.tbi.dvc | 110.0 B | 4431e7e11fd54a202735d32976244a73 |
| genomic_resource.yaml | 1.88 KB | 43c59d7821fcf9117b7f28a4c0bbfe7a |
| genomic_resource_original.yaml | 1.77 KB | 92d864733021f3b51d8b940c98ccde59 |
| statistics/ |