Resource

Id DNase-seq/ENCSR022ECCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR022ECC [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (96 days)"]
Description
Labels
  • accession: ENCSR022ECC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0005270/
  • biosample_summary: Homo sapiens renal cortex interstitium tissue female embryo (96 days)
  • date_created: 2015-09-16T21:42:34.479884+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR022ECC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR022ECC float

DNase-seq_ENCSR022ECC
DNase-seq ENCSR022ECC [biosample_summary="Homo sapiens renal cortex interstitium tissue female embryo (96 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR022ECC [0.234, 26.7]
n
11,144,634
mean
3.44
sd
3.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 111446340.35% 60238
chr1 1049174 0.42% 5626
chr2 846553 0.35% 4623
chr3 705606 0.36% 3802
chr4 550528 0.29% 2974
chr5 601813 0.33% 3262
chr6 674045 0.39% 3563
chr7 557401 0.35% 3023
chr8 493693 0.34% 2707
chr9 470778 0.34% 2574
chr10 538801 0.40% 2965
chr11 561299 0.42% 3055
chr12 552516 0.41% 2966
chr13 270810 0.24% 1522
chr14 373515 0.35% 2005
chr15 370835 0.36% 2002
chr16 359268 0.40% 1952
chr17 474863 0.57% 2524
chr18 242733 0.30% 1334
chr19 516181 0.88% 2589
chr20 290961 0.45% 1632
chr21 117432 0.25% 665
chr22 203305 0.40% 1117
chrX 322384 0.21% 1755
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 60238 3 840 185.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF463LTS.bed.gz 639.53 KB 99c8a410b554f9551b10a90859229d5b
ENCFF463LTS.tabix.bed.gz 572.09 KB ad8cab3b1bb78a289a49e2353bc246fc
ENCFF463LTS.tabix.bed.gz.tbi 317.28 KB 3b13fba51d837f3d83bef35c19646a28
genomic_resource.yaml 1.88 KB 43c59d7821fcf9117b7f28a4c0bbfe7a
statistics/