Resource

Id DNase-seq/ENCSR021YFWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR021YFW [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
Description
Labels
  • accession: ENCSR021YFW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000499/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • date_created: 2019-08-24T00:09:40.526570+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR021YFW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR021YFW float

DNase-seq_ENCSR021YFW
DNase-seq ENCSR021YFW [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR021YFW [0.0361, 64.7]
n
23,048,067
mean
3.66
sd
6.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 230480670.72% 119908
chr1 2254781 0.91% 11666
chr2 1760174 0.73% 9236
chr3 1284881 0.65% 6738
chr4 779675 0.41% 4084
chr5 1032345 0.57% 5430
chr6 1281870 0.75% 6702
chr7 1060748 0.67% 5548
chr8 983136 0.68% 5198
chr9 988223 0.71% 5170
chr10 1147988 0.86% 5967
chr11 1225628 0.91% 6418
chr12 1091770 0.82% 5643
chr13 471479 0.41% 2489
chr14 804412 0.75% 4205
chr15 755524 0.74% 3991
chr16 933870 1.03% 4804
chr17 1318359 1.58% 6697
chr18 397906 0.50% 2092
chr19 1216459 2.08% 6054
chr20 679212 1.05% 3557
chr21 307611 0.66% 1598
chr22 554855 1.09% 2874
chrX 685854 0.44% 3575
chrY 31307 0.05% 172
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 119908 1 1040 192.21 180
global segment-length histogram

Files

Filename Size md5
ENCFF067SGU.bed.gz 1.31 MB 06c8fc0b68eed72c193ab62d6dbaa7ac
ENCFF067SGU.tabix.bed.gz 1.2 MB 011731f0857e63fb757496326dc6b67b
ENCFF067SGU.tabix.bed.gz.tbi 379.15 KB 3b03b197dbe31fe5a5d391826595bc84
genomic_resource.yaml 1.63 KB 214e598ffdf01d4edce5bd84af4e733f
statistics/