Resource

Id DNase-seq/ENCSR020LUDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR020LUD [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)"]
Description
Labels
  • accession: ENCSR020LUD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)
  • date_created: 2015-09-16T21:42:06.531058+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR020LUD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR020LUD float

DNase-seq_ENCSR020LUD
DNase-seq ENCSR020LUD [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR020LUD [6, 4.87e+04]
n
29,439,790
mean
1.22e+03
sd
3.29e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 294397900.92% 196019
chr1 2802047 1.13% 18662
chr2 2311172 0.95% 15387
chr3 1728295 0.87% 11509
chr4 1252806 0.66% 8339
chr5 1465513 0.81% 9752
chr6 1774581 1.04% 11821
chr7 1440385 0.90% 9594
chr8 1195407 0.82% 7955
chr9 1214458 0.88% 8090
chr10 1329124 0.99% 8848
chr11 1496771 1.11% 9972
chr12 1464839 1.10% 9751
chr13 694972 0.61% 4629
chr14 1022138 0.95% 6814
chr15 945401 0.93% 6296
chr16 1048165 1.16% 6977
chr17 1534595 1.84% 10210
chr18 568699 0.71% 3784
chr19 1406853 2.40% 9362
chr20 772275 1.20% 5143
chr21 372300 0.80% 2479
chr22 632388 1.24% 4212
chrX 906399 0.58% 6032
chrY 60207 0.11% 401
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 196019 11 450 150.19 150
global segment-length histogram

Files

Filename Size md5
ENCFF663INK.bed.gz 1.9 MB b35fa37f7a3dcc8c1f70a586346464ea
ENCFF663INK.tabix.bed.gz 1.64 MB bca9da8ce086f203b9b45dff8379b276
ENCFF663INK.tabix.bed.gz.tbi 545.09 KB 9a081c554c474a3e5a4b760300a5782b
genomic_resource.yaml 1.43 KB 47e1ef731ebcd7897b7e62f3638654f5
statistics/