| Id: | DNase-seq/ENCSR019MZH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR019MZH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF006BAB|/files/ENCFF006BAB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26735014 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR019MZH | float |
DNase-seq_ENCSR019MZH |
DNase-seq ENCSR019MZH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
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[0.413, 66.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF083GMS.bed.gz | 525.05 KB | a02e827767230d8a4661b44f64b4e0bd |
| ENCFF083GMS.bed.gz.dvc | 100.0 B | 8da518e281d70c87473e390c09b03a20 |
| ENCFF083GMS.tabix.bed.gz | 471.19 KB | f370c14dce76a8c87ab934904e8f4908 |
| ENCFF083GMS.tabix.bed.gz.dvc | 106.0 B | 628c29b85b7a11bea915a7d0dee8410b |
| ENCFF083GMS.tabix.bed.gz.tbi | 249.18 KB | 943f7f7a5aaba88fcda4e8cffcb3430e |
| ENCFF083GMS.tabix.bed.gz.tbi.dvc | 110.0 B | fb7ca90f745cd1b2edb22a71dea3229f |
| genomic_resource.yaml | 2.45 KB | e4ae228084d18dac21266fdb0cfb2d0b |
| genomic_resource_original.yaml | 2.22 KB | 6522c08ccd9b188022603a47787f7d19 |
| statistics/ |