Resource

Id DNase-seq/ENCSR019MZHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR019MZH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR019MZH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours
  • date_created: 2020-04-18T22:21:50.558300+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR019MZH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR019MZH float

DNase-seq_ENCSR019MZH
DNase-seq ENCSR019MZH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR019MZH [0.413, 66.2]
n
8,540,333
mean
7
sd
7.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 85403330.27% 47880
chr1 858739 0.34% 4803
chr2 615043 0.25% 3463
chr3 491144 0.25% 2775
chr4 308781 0.16% 1751
chr5 400490 0.22% 2271
chr6 518847 0.30% 2901
chr7 389514 0.24% 2228
chr8 321900 0.22% 1838
chr9 343811 0.25% 1922
chr10 382578 0.29% 2184
chr11 430451 0.32% 2386
chr12 449235 0.34% 2493
chr13 178025 0.16% 995
chr14 291162 0.27% 1626
chr15 278862 0.27% 1578
chr16 342247 0.38% 1903
chr17 489287 0.59% 2708
chr18 132371 0.16% 763
chr19 522002 0.89% 2792
chr20 233362 0.36% 1346
chr21 104057 0.22% 579
chr22 192718 0.38% 1066
chrX 265707 0.17% 1509
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47880 15 660 178.37 180
global segment-length histogram

Files

Filename Size md5
ENCFF083GMS.bed.gz 525.05 KB a02e827767230d8a4661b44f64b4e0bd
ENCFF083GMS.tabix.bed.gz 471.19 KB f370c14dce76a8c87ab934904e8f4908
ENCFF083GMS.tabix.bed.gz.tbi 249.18 KB 943f7f7a5aaba88fcda4e8cffcb3430e
genomic_resource.yaml 2.45 KB e4ae228084d18dac21266fdb0cfb2d0b
statistics/