Resource

Id DNase-seq/ENCSR019JDOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR019JDO [biosample_summary="Homo sapiens Karpas-422"]
Description
Labels
  • accession: ENCSR019JDO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005719/
  • biosample_summary: Homo sapiens Karpas-422
  • date_created: 2014-09-26T06:22:24.635213+00:00
  • date_released: 2015-11-05
  • doi: 10.17989/ENCSR019JDO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR019JDO float

DNase-seq_ENCSR019JDO
DNase-seq ENCSR019JDO [biosample_summary="Homo sapiens Karpas-422"]
 HISTOGRAM FOR DNase-seq_ENCSR019JDO [1, 3.19e+04]
n
50,447,912
mean
368
sd
911

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 504479121.57% 335852
chr1 4562663 1.83% 30375
chr2 4177126 1.72% 27813
chr3 3370634 1.70% 22448
chr4 2379165 1.25% 15835
chr5 2669892 1.47% 17776
chr6 2822271 1.65% 18777
chr7 2583514 1.62% 17183
chr8 2339149 1.61% 15583
chr9 2133378 1.54% 14198
chr10 2077818 1.55% 13826
chr11 2332442 1.73% 15531
chr12 2448053 1.84% 16299
chr13 1416500 1.24% 9430
chr14 1775538 1.66% 11830
chr15 1650184 1.62% 10997
chr16 1786778 1.98% 11893
chr17 2139780 2.57% 14241
chr18 1214022 1.51% 8077
chr19 1859538 3.17% 12379
chr20 1317723 2.04% 8776
chr21 567747 1.22% 3780
chr22 972086 1.91% 6479
chrX 1799411 1.15% 11976
chrY 52500 0.09% 350
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 335852 2 450 150.21 150
global segment-length histogram

Files

Filename Size md5
ENCFF962TGH.bed.gz 3.2 MB f84ad4c5b93568673f31db9f1946ef3c
ENCFF962TGH.tabix.bed.gz 2.74 MB 5b2756ca3ea7e344f7dec49553379f75
ENCFF962TGH.tabix.bed.gz.tbi 675.23 KB 0ba1a714b98e758b841dc72a24fc34e8
genomic_resource.yaml 1.27 KB e0857a5d128b34586d57aa730b0d4331
statistics/