DNase-seq_ENCSR017TFH
DNase-seq ENCSR017TFH [biosample_summary="Homo sapiens right kidney tissue female embryo (87 days)"]
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| Id: | DNase-seq/ENCSR017TFH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR017TFH [biosample_summary="Homo sapiens right kidney tissue female embryo (87 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (87 days) output_type: peaks audit_warning: Alignment file {ENCFF615QUD|/files/ENCFF615QUD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27696579 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR017TFH | float |
DNase-seq_ENCSR017TFH |
DNase-seq ENCSR017TFH [biosample_summary="Homo sapiens right kidney tissue female embryo (87 days)"]
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[0.253, 20.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF691WRQ.bed.gz | 553.87 KB | 42d04b5d12e6cfdd64c4b53846c9d6d8 |
| ENCFF691WRQ.bed.gz.dvc | 100.0 B | f038b17cddc8a6bb51c406a12795df7e |
| ENCFF691WRQ.tabix.bed.gz | 492.65 KB | ece2e1cb852f8478ed1b8103db8a3c87 |
| ENCFF691WRQ.tabix.bed.gz.dvc | 106.0 B | fd603d379e50ce6571c3e4eebdbe7f6d |
| ENCFF691WRQ.tabix.bed.gz.tbi | 294.63 KB | d0ed6b8af321ec4d3280ddab238fa6f3 |
| ENCFF691WRQ.tabix.bed.gz.tbi.dvc | 110.0 B | 017f4cfbb5e852123fc33b5bf06c2007 |
| genomic_resource.yaml | 1.84 KB | 4dc8b4ca47b4c16f65baa234a6f37326 |
| genomic_resource_original.yaml | 1.74 KB | 617659647571f7623c19e9308aa96408 |
| statistics/ |