Resource
| Id | DNase-seq/ENCSR017TFH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR017TFH [biosample_summary="Homo sapiens right kidney tissue female embryo (87 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (87 days) output_type: peaks audit_warning: Alignment file {ENCFF615QUD|/files/ENCFF615QUD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27696579 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR017TFH | float |
DNase-seq_ENCSR017TFH |
DNase-seq ENCSR017TFH [biosample_summary="Homo sapiens right kidney tissue female embryo (87 days)"]
|
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[0.253, 20.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9440650 | 0.29% | 52425 |
| chr1 | 865258 | 0.35% | 4768 |
| chr2 | 732330 | 0.30% | 4111 |
| chr3 | 611614 | 0.31% | 3401 |
| chr4 | 493145 | 0.26% | 2762 |
| chr5 | 538778 | 0.30% | 2975 |
| chr6 | 562150 | 0.33% | 3097 |
| chr7 | 474849 | 0.30% | 2686 |
| chr8 | 420481 | 0.29% | 2385 |
| chr9 | 384446 | 0.28% | 2155 |
| chr10 | 438841 | 0.33% | 2469 |
| chr11 | 495510 | 0.37% | 2762 |
| chr12 | 477781 | 0.36% | 2635 |
| chr13 | 251370 | 0.22% | 1383 |
| chr14 | 303752 | 0.28% | 1663 |
| chr15 | 318669 | 0.31% | 1759 |
| chr16 | 309571 | 0.34% | 1721 |
| chr17 | 369634 | 0.44% | 2026 |
| chr18 | 223255 | 0.28% | 1259 |
| chr19 | 416826 | 0.71% | 2128 |
| chr20 | 238992 | 0.37% | 1366 |
| chr21 | 97781 | 0.21% | 564 |
| chr22 | 153589 | 0.30% | 869 |
| chrX | 261786 | 0.17% | 1479 |
| chrY | 242 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 52425 | 1 | 1040 | 180.08 | 177 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF691WRQ.bed.gz | 553.87 KB | 42d04b5d12e6cfdd64c4b53846c9d6d8 |
| ENCFF691WRQ.tabix.bed.gz | 492.65 KB | ece2e1cb852f8478ed1b8103db8a3c87 |
| ENCFF691WRQ.tabix.bed.gz.tbi | 294.63 KB | d0ed6b8af321ec4d3280ddab238fa6f3 |
| genomic_resource.yaml | 1.84 KB | 4dc8b4ca47b4c16f65baa234a6f37326 |
| statistics/ |
