DNase-seq_ENCSR017SBI
DNase-seq ENCSR017SBI [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"]
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| Id: | DNase-seq/ENCSR017SBI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR017SBI [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: with multiple sclerosis output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF052ZPU|/files/ENCFF052ZPU/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR017SBI | float |
DNase-seq_ENCSR017SBI |
DNase-seq ENCSR017SBI [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"]
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[0.0927, 26.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF660UHQ.bed.gz | 644.86 KB | e9195fe802a5cecdb073a9cf1abdaa79 |
| ENCFF660UHQ.bed.gz.dvc | 100.0 B | bd26e609269a8d207b9fd9a9fb6429ef |
| ENCFF660UHQ.tabix.bed.gz | 593.6 KB | 59ca7121101c11fc3b2adac6ca913585 |
| ENCFF660UHQ.tabix.bed.gz.dvc | 106.0 B | 9056b89b55a3428a177c0e1ad838717a |
| ENCFF660UHQ.tabix.bed.gz.tbi | 273.14 KB | 770f390e4d767cf687018ceacb8ac6ca |
| ENCFF660UHQ.tabix.bed.gz.tbi.dvc | 110.0 B | fbb7c9ce4e3bdac09d72603d7a143ea8 |
| genomic_resource.yaml | 2.02 KB | 235d8b49c282904d07fcaf0710972b3f |
| genomic_resource_original.yaml | 1.92 KB | cf9c43a45395d64df46443c163374fa4 |
| statistics/ |