Resource

Id DNase-seq/ENCSR017SBIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR017SBI [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"]
Description
Labels
  • accession: ENCSR017SBI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000788/
  • biosample_summary: Homo sapiens with multiple sclerosis; naive B cell
  • date_created: 2022-02-07T22:20:22.108156+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR017SBI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: with multiple sclerosis
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR017SBI float

DNase-seq_ENCSR017SBI
DNase-seq ENCSR017SBI [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"]
 HISTOGRAM FOR DNase-seq_ENCSR017SBI [0.0927, 26.7]
n
12,370,197
mean
2.64
sd
2.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 123701970.38% 59308
chr1 1180259 0.47% 5622
chr2 913763 0.38% 4382
chr3 724645 0.37% 3508
chr4 490506 0.26% 2335
chr5 606991 0.33% 2856
chr6 797430 0.47% 3792
chr7 596878 0.37% 2879
chr8 502516 0.35% 2434
chr9 497411 0.36% 2412
chr10 547030 0.41% 2639
chr11 622177 0.46% 2973
chr12 650350 0.49% 3114
chr13 260463 0.23% 1277
chr14 420160 0.39% 2001
chr15 391981 0.38% 1907
chr16 456853 0.51% 2204
chr17 682954 0.82% 3224
chr18 229403 0.29% 1123
chr19 684054 1.17% 3190
chr20 314324 0.49% 1536
chr21 147550 0.32% 701
chr22 285778 0.56% 1385
chrX 352523 0.23% 1744
chrY 14198 0.02% 70
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59308 1 1280 208.58 200
global segment-length histogram

Files

Filename Size md5
ENCFF660UHQ.bed.gz 644.86 KB e9195fe802a5cecdb073a9cf1abdaa79
ENCFF660UHQ.tabix.bed.gz 593.6 KB 59ca7121101c11fc3b2adac6ca913585
ENCFF660UHQ.tabix.bed.gz.tbi 273.14 KB 770f390e4d767cf687018ceacb8ac6ca
genomic_resource.yaml 2.02 KB 235d8b49c282904d07fcaf0710972b3f
statistics/