DNase-seq_ENCSR017OZH
DNase-seq ENCSR017OZH [biosample_summary="Homo sapiens H9 S1 phase stably expressing CDT1, stably expressing GMNN"]
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| Id: | DNase-seq/ENCSR017OZH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR017OZH [biosample_summary="Homo sapiens H9 S1 phase stably expressing CDT1, stably expressing GMNN"] |
| Description: |
status: released biological_replicates: Rep 1 summary: stably expressing C-terminal DsRed-tagged CDT1, stably expressing N-terminal eGFP-tagged GMNN S1 phase output_type: peaks audit_internal_action: Archived analysis {ENCAN529HKZ|/analyses/ENCAN529HKZ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF997FAV|/files/ENCFF997FAV/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF967UAJ|/files/ENCFF967UAJ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR017OZH | float |
DNase-seq_ENCSR017OZH |
DNase-seq ENCSR017OZH [biosample_summary="Homo sapiens H9 S1 phase stably expressing CDT1, stably expressing GMNN"]
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[1, 3.55e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF329IHN.bed.gz | 2.0 MB | 6bb6ed18e075ad1f2c660a003d2a86e1 |
| ENCFF329IHN.bed.gz.dvc | 101.0 B | 94a6a7c2c37d32cdc61c5d2255800def |
| ENCFF329IHN.tabix.bed.gz | 1.72 MB | dce9b7435ff83f6c05114e05d4ab3d85 |
| ENCFF329IHN.tabix.bed.gz.dvc | 107.0 B | f3efe731ca9e1f08d2bf561aa93c4ed3 |
| ENCFF329IHN.tabix.bed.gz.tbi | 668.07 KB | 1c5665d9c5b787aececb16de6c029b48 |
| ENCFF329IHN.tabix.bed.gz.tbi.dvc | 110.0 B | 48685bdead21cbf25c1d3e2dba80ce1c |
| genomic_resource.yaml | 3.21 KB | e51cc4dd71050515dee32668c0d16879 |
| genomic_resource_original.yaml | 3.1 KB | ae4dc6bb727d3a7e72c9d4578fed82d3 |
| statistics/ |