type: position_score
table:
  filename: ENCFF329IHN.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR017OZH
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR017OZH [TISSUE: Homo sapiens H9 S1 phase stably expressing
    CDT1, stably expressing GMNN]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: stably expressing C-terminal DsRed-tagged CDT1, stably expressing
    N-terminal eGFP-tagged GMNN S1 phase


    **output\_type**: peaks


    **audit\_internal\_action**: Archived analysis {ENCAN529HKZ|/analyses/ENCAN529HKZ/}
    has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/}


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF997FAV|/files/ENCFF997FAV/} processed by DNase-seq ENCODE3
    GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly  have
    a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq/})


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF967UAJ|/files/ENCFF967UAJ/} processed by DNase-seq ENCODE3
    GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly  have
    a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR017OZH
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: stably expressing C-terminal DsRed-tagged CDT1, stably
      expressing N-terminal eGFP-tagged GMNN S1 phase
    biosample_summary: Homo sapiens H9 S1 phase stably expressing CDT1, stably expressing
      GMNN
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0003045/
    perturbed: false
    doi: 10.17989/ENCSR017OZH
    date_created: '2016-03-30T17:23:15.976228+00:00'
    date_released: '2016-08-01'
    submitter_comment: ''
