Resource

Id DNase-seq/ENCSR015FZFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR015FZF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
Description
Labels
  • accession: ENCSR015FZF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • date_created: 2020-04-19T18:36:59.283986+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR015FZF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR015FZF float

DNase-seq_ENCSR015FZF
DNase-seq ENCSR015FZF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR015FZF [0.321, 37]
n
7,675,473
mean
5.13
sd
4.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 76754730.24% 39934
chr1 785451 0.32% 4072
chr2 534897 0.22% 2780
chr3 416949 0.21% 2152
chr4 265117 0.14% 1377
chr5 340436 0.19% 1759
chr6 443975 0.26% 2276
chr7 347608 0.22% 1816
chr8 276465 0.19% 1453
chr9 317508 0.23% 1648
chr10 343172 0.26% 1810
chr11 390420 0.29% 2054
chr12 397888 0.30% 2054
chr13 152781 0.13% 789
chr14 268070 0.25% 1372
chr15 246833 0.24% 1317
chr16 327823 0.36% 1726
chr17 460302 0.55% 2378
chr18 114850 0.14% 615
chr19 535808 0.91% 2721
chr20 219901 0.34% 1170
chr21 87442 0.19% 468
chr22 190448 0.37% 1014
chrX 203919 0.13% 1072
chrY 7410 0.01% 41
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39934 3 760 192.2 180
global segment-length histogram

Files

Filename Size md5
ENCFF900SLJ.bed.gz 437.16 KB 1b9220711e9adc9df496cc8509f5e358
ENCFF900SLJ.tabix.bed.gz 397.0 KB c0338616627d42e60302622a6f7adb79
ENCFF900SLJ.tabix.bed.gz.tbi 205.74 KB aab8c4b7e2a8d7f7b0d52cdb0e267153
genomic_resource.yaml 2.44 KB bddc5fdd5f55844936de604c4efd88db
statistics/