| Id: | DNase-seq/ENCSR015FZF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR015FZF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF832AFE|/files/ENCFF832AFE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40611018 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR015FZF | float |
DNase-seq_ENCSR015FZF |
DNase-seq ENCSR015FZF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
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[0.321, 37] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF900SLJ.bed.gz | 437.16 KB | 1b9220711e9adc9df496cc8509f5e358 |
| ENCFF900SLJ.bed.gz.dvc | 100.0 B | 4999e35f04d1fa77ed3d00155c744e69 |
| ENCFF900SLJ.tabix.bed.gz | 397.0 KB | c0338616627d42e60302622a6f7adb79 |
| ENCFF900SLJ.tabix.bed.gz.dvc | 106.0 B | 9cea533a8f55e4ac38bdc1fc25c1e64f |
| ENCFF900SLJ.tabix.bed.gz.tbi | 205.74 KB | aab8c4b7e2a8d7f7b0d52cdb0e267153 |
| ENCFF900SLJ.tabix.bed.gz.tbi.dvc | 110.0 B | 80244346896a2da8350f200ce4ace567 |
| genomic_resource.yaml | 2.44 KB | bddc5fdd5f55844936de604c4efd88db |
| genomic_resource_original.yaml | 2.21 KB | 10f26a1572fcfe469478f38cd2e59cbc |
| statistics/ |