DNase-seq_ENCSR014GTH
DNase-seq ENCSR014GTH [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (81 years)"]
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| Id: | DNase-seq/ENCSR014GTH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR014GTH [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (81 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (81 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF535RWT|/files/ENCFF535RWT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR014GTH | float |
DNase-seq_ENCSR014GTH |
DNase-seq ENCSR014GTH [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (81 years)"]
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[0.0312, 17.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF891JQG.bed.gz | 1.92 MB | 04af6fbcd7d013ccdf47694f9ec4cf37 |
| ENCFF891JQG.bed.gz.dvc | 101.0 B | 0498863b9290cfb657c19ad4acfba7a6 |
| ENCFF891JQG.tabix.bed.gz | 1.8 MB | 2cebe57168addaa6af08004d7083b5e9 |
| ENCFF891JQG.tabix.bed.gz.dvc | 107.0 B | e974fc39e1ecf542df549b74b6d00457 |
| ENCFF891JQG.tabix.bed.gz.tbi | 337.13 KB | 32775db77fbfb54d9843dcf3715ef16c |
| ENCFF891JQG.tabix.bed.gz.tbi.dvc | 110.0 B | b188d189fa757845c825ab214a763bd0 |
| genomic_resource.yaml | 2.23 KB | ebb824804d719b2e633212c081b716cd |
| genomic_resource_original.yaml | 2.08 KB | 38aabecf2c52e1f6f886be2f008875fd |
| statistics/ |