Resource

Id DNase-seq/ENCSR014FPYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR014FPY [biosample_summary="Homo sapiens iPS DF 4.7"]
Description
Labels
  • accession: ENCSR014FPY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007097/
  • biosample_summary: Homo sapiens iPS DF 4.7
  • date_created: 2015-09-16T21:42:16.660150+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR014FPY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR014FPY float

DNase-seq_ENCSR014FPY
DNase-seq ENCSR014FPY [biosample_summary="Homo sapiens iPS DF 4.7"]
 HISTOGRAM FOR DNase-seq_ENCSR014FPY [3, 1.53e+03]
n
8,606,322
mean
29.3
sd
21.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 86063220.27% 57260
chr1 769521 0.31% 5124
chr2 686039 0.28% 4564
chr3 571428 0.29% 3798
chr4 484963 0.25% 3227
chr5 494507 0.27% 3292
chr6 511898 0.30% 3404
chr7 450410 0.28% 2996
chr8 410323 0.28% 2731
chr9 354860 0.26% 2362
chr10 394825 0.30% 2626
chr11 441163 0.33% 2933
chr12 472350 0.35% 3143
chr13 239100 0.21% 1590
chr14 265200 0.25% 1762
chr15 267701 0.26% 1783
chr16 265800 0.29% 1772
chr17 326080 0.39% 2169
chr18 206700 0.26% 1374
chr19 308472 0.53% 2050
chr20 208311 0.32% 1385
chr21 88621 0.19% 590
chr22 130650 0.26% 871
chrX 239100 0.15% 1592
chrY 18300 0.03% 122
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 57260 60 418 150.3 150
global segment-length histogram

Files

Filename Size md5
ENCFF270BAF.bed.gz 553.02 KB c95463c7385c52c961b2a20274fdf2a5
ENCFF270BAF.tabix.bed.gz 473.02 KB 31e87eb7968173ca55b17eb145fe30ea
ENCFF270BAF.tabix.bed.gz.tbi 356.81 KB 812b2e239c5fda8a338e57f154ad9a09
genomic_resource.yaml 1.27 KB db7487955da8789b310b0a9e48861e42
statistics/