DNase-seq_ENCSR011VHK
DNase-seq ENCSR011VHK [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"]
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| Id: | DNase-seq/ENCSR011VHK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR011VHK [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: with multiple sclerosis output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF528VKG|/files/ENCFF528VKG/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR011VHK | float |
DNase-seq_ENCSR011VHK |
DNase-seq ENCSR011VHK [biosample_summary="Homo sapiens with multiple sclerosis; naive B cell"]
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[0.13, 35.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF581DQN.bed.gz | 688.76 KB | 9af037f654477f005e0f3a671a1dedaf |
| ENCFF581DQN.bed.gz.dvc | 100.0 B | 6f5f0f453f932fa5e6bbd5be87b4ed13 |
| ENCFF581DQN.tabix.bed.gz | 633.4 KB | 1ebbd0d934f4323ed03120fbaa24e976 |
| ENCFF581DQN.tabix.bed.gz.dvc | 106.0 B | 325d7b2169407fd72e09a82c4d276aa8 |
| ENCFF581DQN.tabix.bed.gz.tbi | 281.81 KB | 4aa6b2b5e2cf7beae7d3531472a2de5d |
| ENCFF581DQN.tabix.bed.gz.tbi.dvc | 110.0 B | 4d135cb1030671bb020a2b946e16c183 |
| genomic_resource.yaml | 2.02 KB | a7013b513cf147aa86f7dcde444c24df |
| genomic_resource_original.yaml | 1.92 KB | 0db921cfa49a37467a0eec4107ed2237 |
| statistics/ |