DNase-seq_ENCSR011SAG
DNase-seq ENCSR011SAG [biosample_summary="Homo sapiens mucosa of gallbladder tissue female child (16 years)"]
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| Id: | DNase-seq/ENCSR011SAG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR011SAG [biosample_summary="Homo sapiens mucosa of gallbladder tissue female child (16 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF055BIA|/files/ENCFF055BIA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR011SAG | float |
DNase-seq_ENCSR011SAG |
DNase-seq ENCSR011SAG [biosample_summary="Homo sapiens mucosa of gallbladder tissue female child (16 years)"]
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[0.057, 22] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF467VBW.bed.gz | 1.11 MB | 6c43a9ce2c76addf76ad16c7cdf2e15f |
| ENCFF467VBW.bed.gz.dvc | 101.0 B | d6eff655e509c987c5dd59022c66accc |
| ENCFF467VBW.tabix.bed.gz | 1.01 MB | 621b5ab8424a924d4669b8025d01c8b6 |
| ENCFF467VBW.tabix.bed.gz.dvc | 107.0 B | d2ce88ee4bec658836021020eee5cf9a |
| ENCFF467VBW.tabix.bed.gz.tbi | 414.33 KB | 05836f8b794430b5fda24d5cef57a881 |
| ENCFF467VBW.tabix.bed.gz.tbi.dvc | 110.0 B | f46f5a28e853ecbf6fc2d195d3337584 |
| genomic_resource.yaml | 2.08 KB | 66ef1fb8b87ee94f4361ff3ec1f034ab |
| genomic_resource_original.yaml | 1.96 KB | 19729047951a138793c8f27eb3dc7d6d |
| statistics/ |