Resource
| Id | DNase-seq/ENCSR011SAG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR011SAG [biosample_summary="Homo sapiens mucosa of gallbladder tissue female child (16 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF055BIA|/files/ENCFF055BIA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR011SAG | float |
DNase-seq_ENCSR011SAG |
DNase-seq ENCSR011SAG [biosample_summary="Homo sapiens mucosa of gallbladder tissue female child (16 years)"]
|
 |
[0.057, 22] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 19083724 | 0.59% | 103708 |
| chr1 | 1848985 | 0.74% | 9990 |
| chr2 | 1537318 | 0.63% | 8491 |
| chr3 | 1104585 | 0.56% | 6069 |
| chr4 | 751305 | 0.39% | 4147 |
| chr5 | 965222 | 0.53% | 5302 |
| chr6 | 1041763 | 0.61% | 5648 |
| chr7 | 920302 | 0.58% | 5025 |
| chr8 | 799222 | 0.55% | 4428 |
| chr9 | 833389 | 0.60% | 4538 |
| chr10 | 996244 | 0.74% | 5445 |
| chr11 | 1058879 | 0.78% | 5712 |
| chr12 | 860792 | 0.65% | 4713 |
| chr13 | 389042 | 0.34% | 2162 |
| chr14 | 629257 | 0.59% | 3412 |
| chr15 | 695316 | 0.68% | 3727 |
| chr16 | 706191 | 0.78% | 3773 |
| chr17 | 956323 | 1.15% | 5050 |
| chr18 | 379127 | 0.47% | 2122 |
| chr19 | 856174 | 1.46% | 4394 |
| chr20 | 576990 | 0.90% | 3145 |
| chr21 | 244891 | 0.52% | 1328 |
| chr22 | 476042 | 0.94% | 2544 |
| chrX | 455586 | 0.29% | 2536 |
| chrY | 779 | <0.01% | 7 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 103708 | 1 | 840 | 184.01 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF467VBW.bed.gz | 1.11 MB | 6c43a9ce2c76addf76ad16c7cdf2e15f |
| ENCFF467VBW.tabix.bed.gz | 1.01 MB | 621b5ab8424a924d4669b8025d01c8b6 |
| ENCFF467VBW.tabix.bed.gz.tbi | 414.33 KB | 05836f8b794430b5fda24d5cef57a881 |
| genomic_resource.yaml | 2.08 KB | 66ef1fb8b87ee94f4361ff3ec1f034ab |
| statistics/ |