Resource

Id DNase-seq/ENCSR010TMXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR010TMX [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR010TMX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • date_created: 2020-04-20T23:45:54.394657+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR010TMX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR010TMX float

DNase-seq_ENCSR010TMX
DNase-seq ENCSR010TMX [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR010TMX [0.265, 25.5]
n
9,923,565
mean
3.59
sd
3.19

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 99235650.31% 51957
chr1 1008632 0.41% 5271
chr2 692326 0.29% 3656
chr3 570093 0.29% 2987
chr4 361541 0.19% 1870
chr5 447296 0.25% 2360
chr6 589051 0.34% 3044
chr7 454718 0.29% 2391
chr8 373561 0.26% 2021
chr9 412059 0.30% 2147
chr10 440460 0.33% 2349
chr11 504292 0.37% 2637
chr12 517950 0.39% 2681
chr13 202656 0.18% 1032
chr14 338335 0.32% 1783
chr15 332784 0.33% 1757
chr16 408701 0.45% 2128
chr17 574324 0.69% 2969
chr18 165186 0.21% 877
chr19 630944 1.08% 3190
chr20 269786 0.42% 1451
chr21 114648 0.25% 602
chr22 230393 0.45% 1218
chrX 273020 0.17% 1480
chrY 10809 0.02% 56
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51957 1 780 191 180
global segment-length histogram

Files

Filename Size md5
ENCFF991YHJ.bed.gz 564.28 KB 29c0f0dfc1973b48d560780f4cc0493b
ENCFF991YHJ.tabix.bed.gz 514.34 KB 7527c881ea0b93c91054964cffd1636a
ENCFF991YHJ.tabix.bed.gz.tbi 256.21 KB d28e51a17ce8de3adaef8a0b2ad67b27
genomic_resource.yaml 1.83 KB fd380bc61be2da0a736672063b04b3d6
statistics/