DNase-seq_ENCSR010SZN
DNase-seq ENCSR010SZN [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
×
| Id: | DNase-seq/ENCSR010SZN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR010SZN [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF222PSK|/files/ENCFF222PSK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR010SZN | float |
DNase-seq_ENCSR010SZN |
DNase-seq ENCSR010SZN [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
|
|
[0.0353, 17.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF361PSA.bed.gz | 1.51 MB | c05a04c0735809a4b5295b2917f30312 |
| ENCFF361PSA.bed.gz.dvc | 101.0 B | 1a9b3ffcf9f24b3886c3b47ba146c346 |
| ENCFF361PSA.tabix.bed.gz | 1.4 MB | 0f64964b0cc760c641f8fe560d56714c |
| ENCFF361PSA.tabix.bed.gz.dvc | 107.0 B | 04c71ecf69fac981165085fbe590aed7 |
| ENCFF361PSA.tabix.bed.gz.tbi | 391.18 KB | 327c674ee85493727dcacd40ac98f63d |
| ENCFF361PSA.tabix.bed.gz.tbi.dvc | 110.0 B | a9c72a8cbcd8686917bf3e25b666b9cd |
| genomic_resource.yaml | 2.25 KB | 005df164c249dc42814edee2949628a1 |
| genomic_resource_original.yaml | 2.1 KB | 2d9054d0df5d27554984363d014cb65d |
| statistics/ |