Resource

Id DNase-seq/ENCSR009KWQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR009KWQ [biosample_summary="Homo sapiens BE2C"]
Description
Labels
  • accession: ENCSR009KWQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005725/
  • biosample_summary: Homo sapiens BE2C
  • date_created: 2019-09-14T19:53:34.572958+00:00
  • date_released: 2020-09-19
  • doi: 10.17989/ENCSR009KWQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR009KWQ float

DNase-seq_ENCSR009KWQ

DNase-seq ENCSR009KWQ [biosample_summary="Homo sapiens BE2C"]
HISTOGRAM FOR DNase-seq_ENCSR009KWQ [0.0517, 1.94e+03]
n
22,671,281
mean
3.21
sd
9.67

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 226712810.70% 124237
chr1 2002454 0.80% 10975
chr2 1842583 0.76% 10022
chr3 1280100 0.65% 7185
chr4 1069007 0.56% 5971
chr5 1228647 0.68% 6863
chr6 1132116 0.66% 6340
chr7 1166205 0.73% 6448
chr8 1090285 0.75% 6050
chr9 1099468 0.79% 5888
chr10 1025498 0.77% 5687
chr11 1188671 0.88% 6450
chr12 1028279 0.77% 5632
chr13 549038 0.48% 3097
chr14 792613 0.74% 4288
chr15 787931 0.77% 4271
chr16 861851 0.95% 4619
chr17 1078695 1.30% 5784
chr18 357808 0.45% 2050
chr19 978339 1.67% 5165
chr20 655579 1.02% 3571
chr21 311032 0.67% 1677
chr22 582946 1.15% 3089
chrX 561438 0.36% 3110
chrY 698 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 124237 3 1080 182.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF744XSP.bed.gz 1.35 MB d051945d30c84ce9202eae5d4e5d8f94
ENCFF744XSP.tabix.bed.gz 1.24 MB 477010f1584e3256f833e0e10173c8a8
ENCFF744XSP.tabix.bed.gz.tbi 453.8 KB 717f718cdfdd3951ef96b80c0918b549
genomic_resource.yaml 1.06 KB 4fcf480abe444ad90c0384ae867d2b2e
statistics/