DNase-seq_ENCSR006XFA
DNase-seq ENCSR006XFA [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"]
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| Id: | DNase-seq/ENCSR006XFA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR006XFA [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (82 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF497WHX|/files/ENCFF497WHX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR006XFA | float |
DNase-seq_ENCSR006XFA |
DNase-seq ENCSR006XFA [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"]
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[0.124, 17.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF580YEP.bed.gz | 387.79 KB | 863d328516ed56dad0cac06301bf5b50 |
| ENCFF580YEP.bed.gz.dvc | 100.0 B | 9da7aa69142059778e3e4452353528de |
| ENCFF580YEP.tabix.bed.gz | 350.46 KB | 2fae3a7e6d419c864aa77fc1e80b115a |
| ENCFF580YEP.tabix.bed.gz.dvc | 106.0 B | 56a16e23b2f004e989ac8e096cd38fb0 |
| ENCFF580YEP.tabix.bed.gz.tbi | 189.76 KB | e57c39825c5cdc635a87463ed333338e |
| ENCFF580YEP.tabix.bed.gz.tbi.dvc | 110.0 B | 4cc39bd97230cd4c2222fd1ed4413d77 |
| genomic_resource.yaml | 2.08 KB | 7a37af9a7e356e3b49d2414e1c383015 |
| genomic_resource_original.yaml | 1.96 KB | 8dba329291b9c9df939d7c8445d2e50e |
| statistics/ |