DNase-seq_ENCSR006MAW
DNase-seq ENCSR006MAW [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (83 years)"]
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| Id: | DNase-seq/ENCSR006MAW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR006MAW [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (83 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (83 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF116NUQ|/files/ENCFF116NUQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR006MAW | float |
DNase-seq_ENCSR006MAW |
DNase-seq ENCSR006MAW [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (83 years)"]
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[0.0553, 14.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF620YIX.bed.gz | 920.58 KB | 845542ca2fbb2ed80e83291f94fe2a23 |
| ENCFF620YIX.bed.gz.dvc | 100.0 B | 7d55f8d69ab1a30784dc21a9174b4356 |
| ENCFF620YIX.tabix.bed.gz | 843.27 KB | fe35a3abb6947122b8dc92d7eb3f320f |
| ENCFF620YIX.tabix.bed.gz.dvc | 106.0 B | 853c232de7e079302f1a700ea1b05e27 |
| ENCFF620YIX.tabix.bed.gz.tbi | 300.85 KB | d9ef50836b419a9c890ac24bf6e7ad3e |
| ENCFF620YIX.tabix.bed.gz.tbi.dvc | 110.0 B | d808a74f8ea1cc2a6195039d98bc73c6 |
| genomic_resource.yaml | 2.08 KB | 919bd6e91883bbec25e0850addb2a6d4 |
| genomic_resource_original.yaml | 1.97 KB | ece75fe58c6165e2ffab6a4265e231e5 |
| statistics/ |