Resource

Id DNase-seq/ENCSR006IMHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR006IMH [biosample_summary="Homo sapiens stomach tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR006IMH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female adult (53 years)
  • date_created: 2019-08-18T16:57:12.178711+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR006IMH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR006IMH float

DNase-seq_ENCSR006IMH

DNase-seq ENCSR006IMH [biosample_summary="Homo sapiens stomach tissue female adult (53 years)"]
HISTOGRAM FOR DNase-seq_ENCSR006IMH [0.0549, 39]
n
21,225,726
mean
2.25
sd
3.32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 212257260.66% 117231
chr1 2075521 0.83% 11435
chr2 1802569 0.74% 9948
chr3 1109668 0.56% 6120
chr4 740884 0.39% 4101
chr5 939554 0.52% 5247
chr6 996084 0.58% 5576
chr7 1049800 0.66% 5855
chr8 852301 0.59% 4734
chr9 994623 0.72% 5395
chr10 1167859 0.87% 6422
chr11 1214471 0.90% 6691
chr12 882254 0.66% 4908
chr13 445809 0.39% 2474
chr14 710445 0.66% 3935
chr15 763450 0.75% 4291
chr16 796174 0.88% 4425
chr17 1158024 1.39% 6337
chr18 378750 0.47% 2122
chr19 1013684 1.73% 5470
chr20 661020 1.03% 3673
chr21 313308 0.67% 1680
chr22 711656 1.40% 3879
chrX 447000 0.29% 2506
chrY 818 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117231 2 920 181.06 180
global segment-length histogram

Files

Filename Size md5
ENCFF731YGM.bed.gz 1.25 MB f6127b496a7f6ae5640162123ecde773
ENCFF731YGM.tabix.bed.gz 1.13 MB 4fc552ad4b46beb93fff74a6d4365bd5
ENCFF731YGM.tabix.bed.gz.tbi 362.17 KB d006262de888fd2b019b283bbe8afc25
genomic_resource.yaml 1.21 KB 407607278cd602dc1d29e0f13ce32efd
statistics/