DNase-seq_ENCSR006IJP
DNase-seq ENCSR006IJP [biosample_summary="Homo sapiens lung tissue embryo (112 days)"]
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| Id: | DNase-seq/ENCSR006IJP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR006IJP [biosample_summary="Homo sapiens lung tissue embryo (112 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: embryo (112 days) output_type: peaks audit_warning: Alignment file {ENCFF588PJU|/files/ENCFF588PJU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 35478179 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR006IJP | float |
DNase-seq_ENCSR006IJP |
DNase-seq ENCSR006IJP [biosample_summary="Homo sapiens lung tissue embryo (112 days)"]
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[0.226, 18.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF266NXE.bed.gz | 658.66 KB | f18f6f50a907d0712c65cfaa08a94006 |
| ENCFF266NXE.bed.gz.dvc | 100.0 B | 073eb31e082c6191e9011ea2cd06d3eb |
| ENCFF266NXE.tabix.bed.gz | 590.26 KB | 5b78a48654902378516f53d8e0391541 |
| ENCFF266NXE.tabix.bed.gz.dvc | 106.0 B | 98edc13218a94b188b2430255fa2d9f9 |
| ENCFF266NXE.tabix.bed.gz.tbi | 347.53 KB | e1716974c8c8ee14a391b93d552e84f4 |
| ENCFF266NXE.tabix.bed.gz.tbi.dvc | 110.0 B | f6200b51eff6c6e2931b8fa6ca55e1f7 |
| genomic_resource.yaml | 1.79 KB | f5d5c9a3d946b57ad314e749ba4c17d8 |
| genomic_resource_original.yaml | 1.7 KB | 170f7b07b0da0bdb793091cf9258ed67 |
| statistics/ |