Resource

Id DNase-seq/ENCSR004SULcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR004SUL [biosample_summary="Homo sapiens GM23338 originated from GM23248"]
Description
Labels
  • accession: ENCSR004SUL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007950/
  • biosample_summary: Homo sapiens GM23338 originated from GM23248
  • date_created: 2014-09-26T06:22:27.068288+00:00
  • date_released: 2015-06-17
  • doi: 10.17989/ENCSR004SUL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR004SUL float

DNase-seq_ENCSR004SUL
DNase-seq ENCSR004SUL [biosample_summary="Homo sapiens GM23338 originated from GM23248"]
 HISTOGRAM FOR DNase-seq_ENCSR004SUL [4, 1e+05]
n
56,877,838
mean
213
sd
345

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 568778381.77% 378926
chr1 4946455 1.99% 32949
chr2 4595868 1.90% 30615
chr3 3689975 1.86% 24579
chr4 3265742 1.72% 21760
chr5 3279187 1.81% 21844
chr6 3442092 2.02% 22931
chr7 3031327 1.90% 20195
chr8 2651771 1.83% 17670
chr9 2344825 1.69% 15625
chr10 2630560 1.97% 17525
chr11 2800536 2.07% 18658
chr12 2738358 2.05% 18243
chr13 1706184 1.49% 11360
chr14 1789389 1.67% 11928
chr15 1720067 1.69% 11464
chr16 1807563 2.00% 12040
chr17 2125433 2.55% 14166
chr18 1376945 1.71% 9174
chr19 1867366 3.19% 12441
chr20 1421782 2.21% 9469
chr21 619080 1.33% 4123
chr22 937482 1.84% 6246
chrX 1960551 1.26% 13061
chrY 129300 0.23% 860
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 378926 21 429 150.1 150
global segment-length histogram

Files

Filename Size md5
ENCFF666TNT.bed.gz 3.62 MB e4489b64dbae5468827ab53fd220d2fe
ENCFF666TNT.tabix.bed.gz 3.11 MB 8302523e4828cf0f3388db6267204494
ENCFF666TNT.tabix.bed.gz.tbi 918.42 KB 300a0d00107c53d8572547b832d67f19
genomic_resource.yaml 1.33 KB 3f71549f97af2744af431d7061e441c2
statistics/