DNase-seq_ENCSR002IHL
DNase-seq ENCSR002IHL [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (83 years)"]
×
| Id: | DNase-seq/ENCSR002IHL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR002IHL [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (83 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (83 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF582DHJ|/files/ENCFF582DHJ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR002IHL | float |
DNase-seq_ENCSR002IHL |
DNase-seq ENCSR002IHL [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (83 years)"]
|
|
[0.0367, 16.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF822HOO.bed.gz | 2.28 MB | 13ed13a15deac062ca8de99161972d96 |
| ENCFF822HOO.bed.gz.dvc | 101.0 B | 94960d858b427de970c135a031757ae5 |
| ENCFF822HOO.tabix.bed.gz | 2.12 MB | be30cf021d2ac4e3af7640dfb73147bb |
| ENCFF822HOO.tabix.bed.gz.dvc | 107.0 B | 5dae7daa02568b91bb0fa52c035c570a |
| ENCFF822HOO.tabix.bed.gz.tbi | 306.63 KB | bf6e368bf000bc06206e0f5cce9f1f66 |
| ENCFF822HOO.tabix.bed.gz.tbi.dvc | 110.0 B | 8d2d90ebcf3ef80582a86a387d0017db |
| genomic_resource.yaml | 2.06 KB | 9d05ad72d931610afa9ddb3e3e5f5e36 |
| genomic_resource_original.yaml | 1.95 KB | 8f202774935c7c4feab319e9fe43dc97 |
| statistics/ |