DNase-seq_ENCSR001QTZ
DNase-seq ENCSR001QTZ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
×
| Id: | DNase-seq/ENCSR001QTZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR001QTZ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF884NRT|/files/ENCFF884NRT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR001QTZ | float |
DNase-seq_ENCSR001QTZ |
DNase-seq ENCSR001QTZ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
|
|
[0.0612, 30.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF844ZIO.bed.gz | 830.41 KB | 5f62ab4aee09c030213eb2eaa51f754a |
| ENCFF844ZIO.bed.gz.dvc | 100.0 B | fbf24a87debf3030165ce5d5c47a9e49 |
| ENCFF844ZIO.tabix.bed.gz | 757.85 KB | b1e012100027dbd52c8049df1777d0c4 |
| ENCFF844ZIO.tabix.bed.gz.dvc | 106.0 B | 0b496f2f1e7a7534d26c0911f9094585 |
| ENCFF844ZIO.tabix.bed.gz.tbi | 291.52 KB | f7a76581ddc58b1e19f447119a82be8f |
| ENCFF844ZIO.tabix.bed.gz.tbi.dvc | 110.0 B | d9e13c4a1cf33670db9bcb5e6e0c81d8 |
| genomic_resource.yaml | 2.31 KB | 28d51b9d18625623a1762ff5241106bf |
| genomic_resource_original.yaml | 2.15 KB | df22b96d6988f4526005ab0dea9f3088 |
| statistics/ |