| Id: | DNase-seq/ENCSR000FJH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000FJH [biosample_summary="Homo sapiens NCI-H460"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN853TPG|/analyses/ENCAN853TPG/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF167OTD|/files/ENCFF167OTD/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 34861870 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000FJH | float |
DNase-seq_ENCSR000FJH |
DNase-seq ENCSR000FJH [biosample_summary="Homo sapiens NCI-H460"]
|
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[4, 1.04e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF274CFC.bed.gz | 1001.64 KB | 6465c221ecf038dbc64ab2a322784d8d |
| ENCFF274CFC.bed.gz.dvc | 101.0 B | 63a432eeb89f1bc3fbb979625d4654e3 |
| ENCFF274CFC.tabix.bed.gz | 871.12 KB | 55e6b9cd31f0ce38007e13a2d9fde741 |
| ENCFF274CFC.tabix.bed.gz.dvc | 106.0 B | 3a27fc24af350e7ca3aefd2d71af10c0 |
| ENCFF274CFC.tabix.bed.gz.tbi | 460.85 KB | 521936e9adf431fdf514fcbcee11448a |
| ENCFF274CFC.tabix.bed.gz.tbi.dvc | 110.0 B | 81916cd0f09dad4572075b7230dfaa25 |
| genomic_resource.yaml | 1.88 KB | 45fe802357ac362769f6ee4a15d864fe |
| genomic_resource_original.yaml | 1.81 KB | 6d08f47f12e6cdc958769b4bf8e8b1fc |
| statistics/ |