Resource

Id DNase-seq/ENCSR000FJHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000FJH [biosample_summary="Homo sapiens NCI-H460"]
Description
Labels
  • accession: ENCSR000FJH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003044/
  • biosample_summary: Homo sapiens NCI-H460
  • date_created: 2013-11-15T05:58:08.295385+00:00
  • date_released: 2016-09-22
  • doi: 10.17989/ENCSR000FJH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000FJH float

DNase-seq_ENCSR000FJH
DNase-seq ENCSR000FJH [biosample_summary="Homo sapiens NCI-H460"]
 HISTOGRAM FOR DNase-seq_ENCSR000FJH [4, 1.04e+05]
n
15,423,219
mean
122
sd
417

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 154232190.48% 102743
chr1 1454458 0.58% 9688
chr2 1320481 0.55% 8792
chr3 879749 0.44% 5859
chr4 772294 0.41% 5144
chr5 941193 0.52% 6272
chr6 870814 0.51% 5801
chr7 842909 0.53% 5616
chr8 676056 0.47% 4507
chr9 643089 0.46% 4286
chr10 726150 0.54% 4839
chr11 681093 0.50% 4537
chr12 795271 0.60% 5294
chr13 401987 0.35% 2675
chr14 522574 0.49% 3482
chr15 455850 0.45% 3038
chr16 515514 0.57% 3436
chr17 672865 0.81% 4483
chr18 346200 0.43% 2301
chr19 508050 0.87% 3386
chr20 398459 0.62% 2655
chr21 170550 0.37% 1136
chr22 250113 0.49% 1667
chrX 544500 0.35% 3629
chrY 33000 0.06% 220
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 102743 28 300 150.11 150
global segment-length histogram

Files

Filename Size md5
ENCFF274CFC.bed.gz 1001.64 KB 6465c221ecf038dbc64ab2a322784d8d
ENCFF274CFC.tabix.bed.gz 871.12 KB 55e6b9cd31f0ce38007e13a2d9fde741
ENCFF274CFC.tabix.bed.gz.tbi 460.85 KB 521936e9adf431fdf514fcbcee11448a
genomic_resource.yaml 1.88 KB 45fe802357ac362769f6ee4a15d864fe
statistics/