| Id: | DNase-seq/ENCSR000FDI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000FDI [biosample_summary="Homo sapiens HT1080"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF089NBC|/files/ENCFF089NBC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27299906 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000FDI | float |
DNase-seq_ENCSR000FDI |
DNase-seq ENCSR000FDI [biosample_summary="Homo sapiens HT1080"]
|
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[0.0221, 35.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF385NWO.bed.gz | 2.14 MB | d3741d29d232f64216f0a874526c3041 |
| ENCFF385NWO.bed.gz.dvc | 101.0 B | 12a1d221f5e349f8b939dd22ded0e7f0 |
| ENCFF385NWO.tabix.bed.gz | 1.95 MB | eaafd241fb878550f4b7d25ad8969c8d |
| ENCFF385NWO.tabix.bed.gz.dvc | 107.0 B | e78566250e0234485848070566b2e926 |
| ENCFF385NWO.tabix.bed.gz.tbi | 703.02 KB | d391f2c4eb4fde511e651fa84efa0916 |
| ENCFF385NWO.tabix.bed.gz.tbi.dvc | 110.0 B | 8e598aee71a0bab23fc861630216d158 |
| genomic_resource.yaml | 1.7 KB | 161f9db8203e6e0cc54a770fb732849c |
| genomic_resource_original.yaml | 1.63 KB | de6dc25f53948e4925095040c9de0b02 |
| statistics/ |