Resource

Id DNase-seq/ENCSR000EQIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EQI [biosample_summary="Homo sapiens T-helper 2 cell male adult (33 years)"]
Description
Labels
  • accession: ENCSR000EQI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000546/
  • biosample_summary: Homo sapiens T-helper 2 cell male adult (33 years)
  • date_created: 2013-12-12T07:10:09.320505+00:00
  • date_released: 2012-07-23
  • doi: 10.17989/ENCSR000EQI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EQI float

DNase-seq_ENCSR000EQI
DNase-seq ENCSR000EQI [biosample_summary="Homo sapiens T-helper 2 cell male adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR000EQI [0.0292, 118]
n
29,371,707
mean
3.47
sd
8.37

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 293717070.91% 162246
chr1 2728757 1.10% 15116
chr2 2385683 0.99% 13238
chr3 1901640 0.96% 10540
chr4 1343793 0.71% 7475
chr5 1539315 0.85% 8543
chr6 1857351 1.09% 10207
chr7 1435163 0.90% 7960
chr8 1294498 0.89% 7172
chr9 1192141 0.86% 6623
chr10 1478070 1.10% 8174
chr11 1362663 1.01% 7556
chr12 1480228 1.11% 8134
chr13 756460 0.66% 4163
chr14 1022858 0.96% 5634
chr15 953570 0.93% 5286
chr16 990284 1.10% 5411
chr17 1324691 1.59% 7233
chr18 598711 0.74% 3351
chr19 1061487 1.81% 5668
chr20 731818 1.14% 4030
chr21 353180 0.76% 1933
chr22 554450 1.09% 3051
chrX 950088 0.61% 5326
chrY 74808 0.13% 422
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 162246 6 980 181.03 180
global segment-length histogram

Files

Filename Size md5
ENCFF769QHG.bed.gz 1.77 MB 43f571616651ca2a02f37356ac40ee3e
ENCFF769QHG.tabix.bed.gz 1.62 MB 5ef3fa8c02646e1327b75ec71bc30d9b
ENCFF769QHG.tabix.bed.gz.tbi 517.59 KB f42700b8bc33f417fc694ae3ba14ceed
genomic_resource.yaml 1.21 KB f501f79f123841b653e6b8b6fa4e5e04
statistics/