Resource

Id DNase-seq/ENCSR000EQDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EQD [biosample_summary="Homo sapiens T-helper 1 cell female adult (26 years)"]
Description
Labels
  • accession: ENCSR000EQD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000545/
  • biosample_summary: Homo sapiens T-helper 1 cell female adult (26 years)
  • date_created: 2013-12-12T07:10:03.047094+00:00
  • date_released: 2012-07-23
  • doi: 10.17989/ENCSR000EQD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EQD float

DNase-seq_ENCSR000EQD

DNase-seq ENCSR000EQD [biosample_summary="Homo sapiens T-helper 1 cell female adult (26 years)"]
HISTOGRAM FOR DNase-seq_ENCSR000EQD [0.0302, 67.9]
n
21,055,731
mean
2.58
sd
4.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 210557310.65% 103646
chr1 2013212 0.81% 9927
chr2 1684722 0.70% 8240
chr3 1344472 0.68% 6599
chr4 898155 0.47% 4466
chr5 1065671 0.59% 5217
chr6 1351806 0.79% 6533
chr7 991741 0.62% 4936
chr8 909839 0.63% 4506
chr9 845405 0.61% 4208
chr10 1016232 0.76% 4983
chr11 994293 0.74% 4966
chr12 1066755 0.80% 5258
chr13 494325 0.43% 2435
chr14 748127 0.70% 3641
chr15 703048 0.69% 3469
chr16 734330 0.81% 3597
chr17 1038971 1.25% 5071
chr18 386261 0.48% 1913
chr19 870272 1.48% 4209
chr20 548367 0.85% 2744
chr21 243046 0.52% 1214
chr22 411813 0.81% 2027
chrX 694069 0.44% 3481
chrY 799 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 103646 3 1000 203.15 200
global segment-length histogram

Files

Filename Size md5
ENCFF830KSX.bed.gz 1.13 MB 275f7fdc7b48e9282fd4178585348c5d
ENCFF830KSX.tabix.bed.gz 1.04 MB e8b0cf06e09b624d3536b117472861ce
ENCFF830KSX.tabix.bed.gz.tbi 389.4 KB 5c8e4d515ef1119e73e23f6a2630261d
genomic_resource.yaml 1.22 KB e81c328ba46bc376fc6ed719faa87332
statistics/