Resource

Id DNase-seq/ENCSR000EQBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EQB [biosample_summary="Homo sapiens T47D"]
Description
Labels
  • accession: ENCSR000EQB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001247/
  • biosample_summary: Homo sapiens T47D
  • date_created: 2014-01-13T00:06:45.037720+00:00
  • date_released: 2012-03-06
  • doi: 10.17989/ENCSR000EQB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EQB float

DNase-seq_ENCSR000EQB
DNase-seq ENCSR000EQB [biosample_summary="Homo sapiens T47D"]
 HISTOGRAM FOR DNase-seq_ENCSR000EQB [1, 4.75e+05]
n
40,071,370
mean
371
sd
1.35e+03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 400713701.25% 266921
chr1 3516033 1.41% 23419
chr2 2909415 1.20% 19372
chr3 2828521 1.43% 18843
chr4 2086084 1.10% 13896
chr5 2389881 1.32% 15920
chr6 2274944 1.33% 15150
chr7 2119650 1.33% 14125
chr8 1969024 1.36% 13121
chr9 1638322 1.18% 10914
chr10 1982588 1.48% 13207
chr11 2129872 1.58% 14193
chr12 1987407 1.49% 13235
chr13 1122622 0.98% 7478
chr14 1388153 1.30% 9248
chr15 1243034 1.22% 8279
chr16 1240200 1.37% 8261
chr17 1597309 1.92% 10646
chr18 836253 1.04% 5568
chr19 1209613 2.06% 8056
chr20 1079421 1.67% 7190
chr21 529950 1.13% 3529
chr22 631943 1.24% 4211
chrX 1335331 0.86% 8889
chrY 25800 0.05% 171
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 266921 14 450 150.12 150
global segment-length histogram

Files

Filename Size md5
ENCFF204PXK.bed.gz 2.56 MB fcfff8b085afa4ca0538e370f7aa6212
ENCFF204PXK.tabix.bed.gz 2.21 MB 6f0f029ea02abfe43f8fc92156fa2b95
ENCFF204PXK.tabix.bed.gz.tbi 803.88 KB 572eedb555e47a2abc7a8dc99bea3f77
genomic_resource.yaml 1.25 KB d05c20ca6f92e9821da282282c40b74b
statistics/