DNase-seq_ENCSR000EQA
DNase-seq ENCSR000EQA [biosample_summary="Homo sapiens skeletal muscle cell"]
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| Id: | DNase-seq/ENCSR000EQA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EQA [biosample_summary="Homo sapiens skeletal muscle cell"] |
| Description: |
status: archived biological_replicates: Rep 1 summary: output_type: peaks audit_internal_action: Archived analysis {ENCAN920MVE|/analyses/ENCAN920MVE/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF350ADG|/files/ENCFF350ADG/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 32723076 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EQA | float |
DNase-seq_ENCSR000EQA |
DNase-seq ENCSR000EQA [biosample_summary="Homo sapiens skeletal muscle cell"]
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[5, 3.64e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF567KMJ.bed.gz | 4.67 MB | 4e48bfafbc24907baa9413685dec5a3d |
| ENCFF567KMJ.bed.gz.dvc | 101.0 B | c23e17d4a99425ba0da6680d69a9c121 |
| ENCFF567KMJ.tabix.bed.gz | 4.07 MB | 57f4c03a1ee7d63f2e4b2e7393ad2b5d |
| ENCFF567KMJ.tabix.bed.gz.dvc | 107.0 B | daec4ec9f14ee03e6860977e70fd7752 |
| ENCFF567KMJ.tabix.bed.gz.tbi | 946.3 KB | ed1700c354e1b5e6a8bf14228eec10c4 |
| ENCFF567KMJ.tabix.bed.gz.tbi.dvc | 110.0 B | 76e86e1914e9fe3e3eaabe3fbba61830 |
| genomic_resource.yaml | 1.92 KB | e0da094cbca3a6aa40e91b68036553ff |
| genomic_resource_original.yaml | 1.84 KB | d9550cdcf78290cd7b305e6ed9e11e47 |
| statistics/ |