| Id: | DNase-seq/ENCSR000EPX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EPX [biosample_summary="Homo sapiens bronchial epithelial cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Alignment file {ENCFF784UXE|/files/ENCFF784UXE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22234898 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPX | float |
DNase-seq_ENCSR000EPX |
DNase-seq ENCSR000EPX [biosample_summary="Homo sapiens bronchial epithelial cell"]
|
![]() |
[0.0363, 18.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF672FFN.bed.gz | 2.89 MB | c399f094b8b3c5e0dc962ae158397b8c |
| ENCFF672FFN.bed.gz.dvc | 101.0 B | ba8dce4e29a64a4322a1de6b018b96db |
| ENCFF672FFN.tabix.bed.gz | 2.63 MB | 48605281564a0008c21e3550f370c3d4 |
| ENCFF672FFN.tabix.bed.gz.dvc | 107.0 B | ec10269e312add8e2505defd6ee70cd4 |
| ENCFF672FFN.tabix.bed.gz.tbi | 784.47 KB | 5ab8cab41438bbb3011e7f70558b75d8 |
| ENCFF672FFN.tabix.bed.gz.tbi.dvc | 110.0 B | 630fcb0bdf578acc247f45b3f4215c52 |
| genomic_resource.yaml | 1.76 KB | 8da9d87522e841657ed9020514885fe1 |
| genomic_resource_original.yaml | 1.67 KB | 8bbfd019781b248f44e04d527c5d318d |
| statistics/ |