Resource

Id DNase-seq/ENCSR000EPXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPX [biosample_summary="Homo sapiens bronchial epithelial cell"]
Description
Labels
  • accession: ENCSR000EPX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002328/
  • biosample_summary: Homo sapiens bronchial epithelial cell
  • date_created: 2013-12-19T23:39:16.851235+00:00
  • date_released: 2010-12-16
  • doi: 10.17989/ENCSR000EPX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPX float

DNase-seq_ENCSR000EPX
DNase-seq ENCSR000EPX [biosample_summary="Homo sapiens bronchial epithelial cell"]
 HISTOGRAM FOR DNase-seq_ENCSR000EPX [0.0363, 18.1]
n
50,956,403
mean
1.51
sd
1.95

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 509564031.58% 271109
chr1 4667342 1.87% 24734
chr2 4317575 1.78% 22999
chr3 3615038 1.82% 19195
chr4 2968243 1.56% 15941
chr5 2987807 1.65% 15976
chr6 3287336 1.92% 17309
chr7 2587676 1.62% 13855
chr8 2542718 1.75% 13559
chr9 2142879 1.55% 11448
chr10 2371449 1.77% 12677
chr11 2548813 1.89% 13479
chr12 2544270 1.91% 13407
chr13 1479458 1.29% 7884
chr14 1566337 1.46% 8306
chr15 1560817 1.53% 8295
chr16 1313436 1.45% 7010
chr17 1752235 2.10% 9281
chr18 1305455 1.62% 6928
chr19 1138666 1.94% 5963
chr20 1216331 1.89% 6466
chr21 585387 1.25% 3049
chr22 682356 1.34% 3627
chrX 1631399 1.05% 8931
chrY 143380 0.25% 790
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 271109 2 1084 187.96 180
global segment-length histogram

Files

Filename Size md5
ENCFF672FFN.bed.gz 2.89 MB c399f094b8b3c5e0dc962ae158397b8c
ENCFF672FFN.tabix.bed.gz 2.63 MB 48605281564a0008c21e3550f370c3d4
ENCFF672FFN.tabix.bed.gz.tbi 784.47 KB 5ab8cab41438bbb3011e7f70558b75d8
genomic_resource.yaml 1.76 KB 8da9d87522e841657ed9020514885fe1
statistics/