DNase-seq_ENCSR000EPW
DNase-seq ENCSR000EPW [biosample_summary="Homo sapiens epithelial cell of proximal tubule"]
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| Id: | DNase-seq/ENCSR000EPW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR000EPW [biosample_summary="Homo sapiens epithelial cell of proximal tubule"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Alignment file {ENCFF230GUV|/files/ENCFF230GUV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22557891 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Alignment file {ENCFF384GNY|/files/ENCFF384GNY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27399352 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR000EPW | float |
DNase-seq_ENCSR000EPW |
DNase-seq ENCSR000EPW [biosample_summary="Homo sapiens epithelial cell of proximal tubule"]
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[0.221, 22.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF948XMS.bed.gz | 692.45 KB | 572e5ceabc6fda124bffb624e45bf1bd |
| ENCFF948XMS.bed.gz.dvc | 100.0 B | 3d53a9585d51d36ad80681f35fdb9f6e |
| ENCFF948XMS.tabix.bed.gz | 613.4 KB | 1ecb7a3948e20489b100735ba7093a46 |
| ENCFF948XMS.tabix.bed.gz.dvc | 106.0 B | 8dae27bf2f6fc7f045efac8a668fb0de |
| ENCFF948XMS.tabix.bed.gz.tbi | 361.02 KB | a3f0a392b355cc66e3784ac9f97bf677 |
| ENCFF948XMS.tabix.bed.gz.tbi.dvc | 110.0 B | 891c7f767eec725ad44fc7bf4ba23392 |
| genomic_resource.yaml | 2.43 KB | 586f3a67157c881e4b3d65d756cc1d9b |
| genomic_resource_original.yaml | 2.33 KB | f9d1f44d8895f7533edceff45b957b0a |
| statistics/ |