Resource

Id DNase-seq/ENCSR000EPVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EPV [biosample_summary="Homo sapiens RPMI7951"]
Description
Labels
  • accession: ENCSR000EPV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005712/
  • biosample_summary: Homo sapiens RPMI7951
  • date_created: 2013-12-12T07:09:53.843845+00:00
  • date_released: 2012-06-12
  • doi: 10.17989/ENCSR000EPV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EPV float

DNase-seq_ENCSR000EPV
DNase-seq ENCSR000EPV [biosample_summary="Homo sapiens RPMI7951"]
 HISTOGRAM FOR DNase-seq_ENCSR000EPV [0.019, 68.2]
n
45,471,947
mean
2.05
sd
3.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 454719471.41% 234661
chr1 4176585 1.68% 21445
chr2 3992526 1.65% 20578
chr3 3113818 1.57% 16166
chr4 2076803 1.09% 10964
chr5 2532266 1.39% 13159
chr6 2831965 1.66% 14626
chr7 2472882 1.55% 12721
chr8 2269780 1.56% 11699
chr9 1799691 1.30% 9302
chr10 2250970 1.68% 11542
chr11 2237355 1.66% 11434
chr12 2111591 1.58% 10941
chr13 1114161 0.97% 5876
chr14 1273980 1.19% 6605
chr15 1624410 1.59% 8308
chr16 1433448 1.59% 7346
chr17 1718404 2.06% 8747
chr18 1001280 1.25% 5296
chr19 1324062 2.26% 6716
chr20 1492937 2.32% 7558
chr21 527429 1.13% 2698
chr22 743470 1.46% 3788
chrX 1351146 0.87% 7139
chrY 988 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 234661 1 820 193.78 197
global segment-length histogram

Files

Filename Size md5
ENCFF270QRU.bed.gz 2.54 MB a7379b8e7d3e1c687b6cf427cc8f434d
ENCFF270QRU.tabix.bed.gz 2.31 MB a323ec00d3795f14af8e4526d0ff470b
ENCFF270QRU.tabix.bed.gz.tbi 669.0 KB b6f979cb83eb5fc0592ad6b7b6e81a1d
genomic_resource.yaml 1.71 KB 52a57bbbd90ecdc9f2ed136236813bba
statistics/